PDB entry 6y9p

View 6y9p on RCSB PDB site
Description: crystal structure of whirlin pdz3_c-ter in complex with harmonin a1 c- terminal pdz binding motif peptide
Deposited on 2020-03-10, released 2020-10-07
The last revision was dated 2020-11-11, with a file datestamp of 2020-11-06.
Experiment type: XRAY
Resolution: 3.17 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Whirlin
    Species: Mus musculus [TaxId:10090]
    Gene: Whrn, Dfnb31, Kiaa1526
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Whirlin
    Species: Mus musculus [TaxId:10090]
    Gene: Whrn, Dfnb31, Kiaa1526
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Harmonin a1
    Species: Rattus norvegicus, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Harmonin a1
    Species: Rattus norvegicus, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Whirlin
    Species: Mus musculus [TaxId:10090]
    Gene: Whrn, Dfnb31, Kiaa1526
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Harmonin a1
    Species: Rattus norvegicus, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Whirlin
    Species: Mus musculus [TaxId:10090]
    Gene: Whrn, Dfnb31, Kiaa1526
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Harmonin a1
    Species: Rattus norvegicus, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Whirlin
    Species: Mus musculus [TaxId:10090]
    Gene: Whrn, Dfnb31, Kiaa1526
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Harmonin a1
    Species: Rattus norvegicus, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Whirlin
    Species: Mus musculus [TaxId:10090]
    Gene: Whrn, Dfnb31, Kiaa1526
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: Harmonin a1
    Species: Rattus norvegicus, synthetic [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6y9pA (A:)
gamgstsleptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvgh
vilevngqtlrgkehkeaariiaeafktkerdyidflvtefnvml

    Sequence, based on observed residues (ATOM records):
    >6y9pA (A:)
eptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvghvilevngq
tlrgkehkeaariiaeafktkerdyidflvtef

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6y9pB (B:)
gamgstsleptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvgh
vilevngqtlrgkehkeaariiaeafktkerdyidflvtefnvml

    Sequence, based on observed residues (ATOM records):
    >6y9pB (B:)
stlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvghvilevngqtlr
gkehkeaariiaeafktkerdyidflvtef

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6y9pC (C:)
pkeyddeltff

    Sequence, based on observed residues (ATOM records):
    >6y9pC (C:)
yddeltff

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6y9pD (D:)
pkeyddeltff

    Sequence, based on observed residues (ATOM records):
    >6y9pD (D:)
ddeltff

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6y9pE (E:)
gamgstsleptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvgh
vilevngqtlrgkehkeaariiaeafktkerdyidflvtefnvml

    Sequence, based on observed residues (ATOM records):
    >6y9pE (E:)
ptstlvrvrksaatlgiaieggantrqplprivtiqrggsacgqlkvghvilevngqtlr
gkehkeaariiaeafktkerdyidflvte

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6y9pF (F:)
pkeyddeltff

    Sequence, based on observed residues (ATOM records):
    >6y9pF (F:)
eltff

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6y9pG (G:)
gamgstsleptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvgh
vilevngqtlrgkehkeaariiaeafktkerdyidflvtefnvml

    Sequence, based on observed residues (ATOM records):
    >6y9pG (G:)
tstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvghvilevngqtl
rgkehkeaariiaeafktkerdyidflvte

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6y9pH (H:)
pkeyddeltff

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6y9pI (I:)
gamgstsleptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvgh
vilevngqtlrgkehkeaariiaeafktkerdyidflvtefnvml

    Sequence, based on observed residues (ATOM records):
    >6y9pI (I:)
tstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvghvilevngqtl
rgkehkeaariiaeafktkerdyidflvte

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6y9pJ (J:)
pkeyddeltff

    Sequence, based on observed residues (ATOM records):
    >6y9pJ (J:)
eltff

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6y9pK (K:)
gamgstsleptstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvgh
vilevngqtlrgkehkeaariiaeafktkerdyidflvtefnvml

    Sequence, based on observed residues (ATOM records):
    >6y9pK (K:)
tstlvrvrksaatlgiaieggantrqplprivtiqrggsahncgqlkvghvilevngqtl
rgkehkeaariiaeafktkerdyidflvte

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6y9pL (L:)
pkeyddeltff

    Sequence, based on observed residues (ATOM records):
    >6y9pL (L:)
eltff