PDB entry 6y97

View 6y97 on RCSB PDB site
Description: structure of full-length cd20 in complex with obinutuzumab fab
Deposited on 2020-03-06, released 2020-08-26
The last revision was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: EM
Resolution: 4.33 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: B-lymphocyte antigen CD20
    Species: Homo sapiens [TaxId:9606]
    Gene: MS4A1, CD20
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: B-lymphocyte antigen CD20
    Species: Homo sapiens [TaxId:9606]
    Gene: MS4A1, CD20
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Obinutuzumab Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Y97 (0-115)
  • Chain 'L':
    Compound: Obinutuzumab Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Y97 (0-109)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6y97A (A:)
fmresktlgavqimnglfhialggllmipagiyapicvtvwyplwggimyiisgsllaat
eknsrkclvkgkmimnslslfaaisgmilsimdilnikishflkmeslnfirahtpyini
yncepanpseknspstqycysiqslflgilsvmlifaffqelviagive

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6y97B (B:)
fmresktlgavqimnglfhialggllmipagiyapicvtvwyplwggimyiisgsllaat
eknsrkclvkgkmimnslslfaaisgmilsimdilnikishflkmeslnfirahtpyini
yncepanpseknspstqycysiqslflgilsvmlifaffqelviagive

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6y97H (H:)
vqlvqsgaevkkpgssvkvsckasgyafsyswinwvrqapgqglewmgrifpgdgdtdyn
gkfkgrvtitadkststaymelsslrsedtavyycarnvfdgywlvywgqgtlvtv

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6y97L (L:)
divmtqtplslpvtpgepasiscrssksllhsngitylywylqkpgqspqlliyqmsnlv
sgvpdrfsgsgsgtdftlkisrveaedvgvyycaqnlelpytfgggtkve