PDB entry 6y90

View 6y90 on RCSB PDB site
Description: structure of full-length cd20 in complex with rituximab fab
Deposited on 2020-03-06, released 2020-08-26
The last revision was dated 2020-08-26, with a file datestamp of 2020-08-21.
Experiment type: EM
Resolution: 3.69 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: B-lymphocyte antigen CD20
    Species: Homo sapiens [TaxId:9606]
    Gene: MS4A1, CD20
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: B-lymphocyte antigen CD20
    Species: Homo sapiens [TaxId:9606]
    Gene: MS4A1, CD20
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Rituximab Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Y90 (0-223)
  • Chain 'D':
    Compound: Rituximab Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Y90 (0-212)
  • Chain 'H':
    Compound: Rituximab Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Y90 (0-223)
  • Chain 'L':
    Compound: Rituximab Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Y90 (0-212)
  • Heterogens: Y01, PC1, MYS

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6y90A (A:)
fmresktlgavqimnglfhialggllmipagiyapicvtvwyplwggimyiisgsllaat
eknsrkclvkgkmimnslslfaaisgmilsimdilnikishflkmeslnfirahtpyini
yncepanpseknspstqycysiqslflgilsvmlifaffqelviagivenew

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6y90B (B:)
fmresktlgavqimnglfhialggllmipagiyapicvtvwyplwggimyiisgsllaat
eknsrkclvkgkmimnslslfaaisgmilsimdilnikishflkmeslnfirahtpyini
yncepanpseknspstqycysiqslflgilsvmlifaffqelviagivenew

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6y90C (C:)
qvqlqqpgaelvkpgasvkmsckasgytftsynmhwvkqtpgrglewigaiypgngdtsy
nqkfkgkatltadkssstaymqlssltsedsavyycarstyyggdwyfnvwgagttvtvs
aastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6y90D (D:)
qivlsqspailsaspgekvtmtcrasssvsyihwfqqkpgsspkpwiyatsnlasgvpvr
fsgsgsgtsysltisrveaedaatyycqqwtsnpptfgggtkleikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6y90H (H:)
qvqlqqpgaelvkpgasvkmsckasgytftsynmhwvkqtpgrglewigaiypgngdtsy
nqkfkgkatltadkssstaymqlssltsedsavyycarstyyggdwyfnvwgagttvtvs
aastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqs
sglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6y90L (L:)
qivlsqspailsaspgekvtmtcrasssvsyihwfqqkpgsspkpwiyatsnlasgvpvr
fsgsgsgtsysltisrveaedaatyycqqwtsnpptfgggtkleikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec