PDB entry 6y5l

View 6y5l on RCSB PDB site
Description: signal subtracted extended intermediate form of x-31 influenza haemagglutinin at ph 5 (state iv)
Deposited on 2020-02-25, released 2020-06-10
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-17.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: X-31 Influenza Haemagglutinin HA1,X-31 Influenza Haemagglutinin HA1
    Species: unidentified influenza virus [TaxId:11309]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: X-31 Influenza Haemagglutinin HA2
    Species: unidentified influenza virus [TaxId:11309]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: X-31 Influenza Haemagglutinin HA1,X-31 Influenza Haemagglutinin HA1
    Species: unidentified influenza virus [TaxId:11309]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: X-31 Influenza Haemagglutinin HA2
    Species: unidentified influenza virus [TaxId:11309]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: X-31 Influenza Haemagglutinin HA1,X-31 Influenza Haemagglutinin HA1
    Species: unidentified influenza virus [TaxId:11309]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: X-31 Influenza Haemagglutinin HA2
    Species: unidentified influenza virus [TaxId:11309]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6y5lA (A:)
avpngtlvktitddqievtnatelvcitpngsipndkpfqnvnkitygacpkyvkqntlk
latgmrnvpe

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6y5lB (B:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktrrqlrenaeemgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfq

    Sequence, based on observed residues (ATOM records):
    >6y5lB (B:)
dlkstqaaidqingklnrviektnekfhqiekefsevegriqdlekyvedtkidlwsyna
ellvalenqhtidltdsemnklfektrrq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6y5lC (C:)
avpngtlvktitddqievtnatelvcitpngsipndkpfqnvnkitygacpkyvkqntlk
latgmrnvpe

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6y5lD (D:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktrrqlrenaeemgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfq

    Sequence, based on observed residues (ATOM records):
    >6y5lD (D:)
dlkstqaaidqingklnrviektnekfhqiekefsevegriqdlekyvedtkidlwsyna
ellvalenqhtidltdsemnklfektrrq

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6y5lE (E:)
avpngtlvktitddqievtnatelvcitpngsipndkpfqnvnkitygacpkyvkqntlk
latgmrnvpe

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6y5lF (F:)
glfgaiagfiengwegmidgwygfrhqnsegtgqaadlkstqaaidqingklnrviektn
ekfhqiekefsevegriqdlekyvedtkidlwsynaellvalenqhtidltdsemnklfe
ktrrqlrenaeemgngcfkiyhkcdnaciesirngtydhdvyrdealnnrfq

    Sequence, based on observed residues (ATOM records):
    >6y5lF (F:)
dlkstqaaidqingklnrviektnekfhqiekefsevegriqdlekyvedtkidlwsyna
ellvalenqhtidltdsemnklfektrrq