PDB entry 6y0q

View 6y0q on RCSB PDB site
Description: Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe, AKG and methylated DNA under anaerobic environment using FT-SSX methods
Class: oxidoreductase
Keywords: iron dependant dioxygenase, DNA repair, 2-oxoglutarate, OXIDOREDUCTASE
Deposited on 2020-02-10, released 2020-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 1.75 Å
R-factor: N/A
AEROSPACI score: 0.47 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Species: Escherichia coli K-12 [TaxId:83333]
    Gene: alkB, aidD, b2212, JW2200
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6y0qa_
  • Heterogens: O5W, AKG, FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6y0qA (A:)
mldlfadaepwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsva
mtncghlgwtthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclin
ryapgaklslhqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwgg
esrlfyhgiqplkagfhpltidcrynltfrqagkke

    Sequence, based on observed residues (ATOM records): (download) 
    >6y0qA (A:)
laagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrq
gylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdk
depdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplka
gfhpltidcrynltfrqagkk