PDB entry 6xz7

View 6xz7 on RCSB PDB site
Description: e. coli 50s ribosomal subunit in complex with dirithromycin, fmet-phe- trna(phe) and deacylated trna(imet).
Deposited on 2020-02-03, released 2020-07-22
The last revision was dated 2020-07-22, with a file datestamp of 2020-07-17.
Experiment type: EM
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 23s rRNA
    Species: Escherichia coli (strain K12) [TaxId:83333]
  • Chain 'B':
    Compound: 5s rRNA
    Species: Escherichia coli (strain K12) [TaxId:83333]
  • Chain 'C':
    Compound: 50S ribosomal protein L2
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L3
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L4
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L5
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L6
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 50s ribosomal protein l10
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A7J3 (0-134)
      • conflict (83-84)
  • Chain 'I':
    Compound: 50S ribosomal protein L11
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 50S ribosomal protein L13
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 50S ribosomal protein L14
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 50S ribosomal protein L15
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 50S ribosomal protein L16
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L17
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L18
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L19
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L20
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L21
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L22
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L23
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L24
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L25
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 50S ribosomal protein L27
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L28
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L29
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L30
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: 50S ribosomal protein L32
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: 50S ribosomal protein L33
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: 50S ribosomal protein L34
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: 50S ribosomal protein L35
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: 50S ribosomal protein L36
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Deacylated tRNAi(Met)
    Species: Escherichia coli (strain K12) [TaxId:83333]
  • Chain 'g':
    Compound: fMet-Phe-tRNA(Phe)
    Species: Saccharomyces cerevisiae [TaxId:4932]
  • Heterogens: DI0, MG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7C (C:)
avvkckptspgrrhvvkvvnpelhkgkpfaplleknsksggrnnngrittrhiggghkqa
yrivdfkrnkdgipavverleydpnrsanialvlykdgerryilapkglkagdqiqsgvd
aaikpgntlpmrnipvgstvhnvemkpgkggqlarsagtyvqivardgayvtlrlrsgem
rkveadcratlgevgnaehmlrvlgkagaarwrgvrptvrgtamnpvdhphgggegrnfg
khpvtpwgvqtkgkktrsnkrtdkfivrrrs

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7D (D:)
miglvgkkvgmtriftedgvsipvtvieveanrvtqvkdlandgyraiqvttgakkanrv
tkpeaghfakagveagrglwefrlaegeeftvgqsisvelfadvkkvdvtgtskgkgfag
tvkrwnfrtqdathgnslshrvpgsigqnqtpgkvfkgkkmagqmgnervtvqsldvvrv
daernlllvkgavpgatgsdlivkpavka

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7E (E:)
melvlkdaqsaltvsettfgrdfnealvhqvvvayaagarqgtraqktraevtgsgkkpw
rqkgtgrarsgsikspiwrsggvtfaarpqdhsqkvnkkmyrgalksilselvrqdrliv
vekfsveapktkllaqklkdmaledvliitgeldenlflaarnlhkvdvrdatgidpvsl
iafdkvvmtadavkqveemla

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7F (F:)
aklhdyykdevvkklmtefnynsvmqvprvekitlnmgvgeaiadkklldnaaadlaais
gqkplitkarksvagfkirqgypigckvtlrgermwefferlitiavprirdfrglsaks
fdgrgnysmgvreqiifpeidydkvdrvrgldititttaksdeegrallaafdfpfr

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7G (G:)
srvakapvvvpagvdvkingqvitikgkngeltrtlndavevkhadntltfgprdgyadg
waqagtarallnsmvigvtegftkklqlvgvgyraavkgnvinlslgfshpvdhqlpagi
taecptqteivlkgadkqvigqvaadlrayrrpepykgkgvryadevvrtkeakkk

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7H (H:)
alnlqdkqaivaevsevakgalsavvadsrgvtvdkmtelrkagreagvymrvvrntllr
ravegtpfeclkdafvgptliayvtehpgaaarlfkefakanakfevkaaafegelipas
qidrlatlptyeeai

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7I (I:)
yvklqvaagmanpsppvgpalgqqgvnimefckafnaktdsiekglpipvvitvyadrsf
tfvtktppaavllkkaagiksgsgkpnkdkvgkisraqlqeiaqtkaadmtgadieamtr
siegtarsmglvve

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7J (J:)
mktftakpetvkrdwyvvdatgktlgrlatelarrlrgkhkaeytphvdtgdyiivlnad
kvavtgnkrtdkvyyhhtghiggikqatfeemiarrpervieiavkgmlpkgplgramfr
klkvyagnehnhaaqqpqvldi

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7K (K:)
miqeqtmlnvadnsgarrvmcikvlggshrryagvgdiikitikeaiprgkvkkgdvlka
vvvrtkkgvrrpdgsvirfdgnacvllnnnseqpigtrifgpvtrelrsekfmkiislap
evl

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7L (L:)
mrlntlspaegskkagkrlgrgigsglgktggrghkgqksrsgggvrrgfeggqmplyrr
lpkfgftsrkaaitaeirlsdlakveggvvdlntlkaaniigiqiefakvilagevttpv
tvrglrvtkgaraaieaaggkiee

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7M (M:)
mlqpkrtkfrkmhkgrnrglaqgtdvsfgsfglkavgrgrltarqieaarramtravkrq
gkiwirvfpdkpitekplavxmgkgkgnveywvaliqpgkvlyemdgvpeelareafkla
aaklpikttfvtktvm

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7N (N:)
mrhrksgrqlnrnsshrqamfrnmagslvrheiikttlpkakelrrvveplitlaktdsv
anrrlafartrdneivaklfnelgprfasraggytrilkcgfragdnapmayielvdrse
kaeaa

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7O (O:)
mdkksarirratrarrklqelgatrlvvhrtprhiyaqviapngsevlvaastvekaiae
qlkytgnkdaaaavgkavaeralekgikdvsfdrsgfqyhgrvqaladaareaglqf

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7P (P:)
sniikqleqeqmkqdvpsfrpgdtvevkvwvvegskkrlqafegvviairnrglhsaftv
rkisngegvervfqthspvvdsisvkrrgavrkaklyylrertgkaarikerln

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7Q (Q:)
arvkrgviararhkkilkqakgyygarsrvyrvafqavikagqyayrdrrqrkrqfrqlw
iarinaaarqngisyskfinglkkasveidrkiladiavfdkvaftalvekakaala

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7R (R:)
myavfqsggkqhrvsegqtvrlekldiatgetvefaevlmiangeevkigvpfvdggvik
aevvahgrgekvkivkfrrrkhyrkqqghrqwftdvkitgisa

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7S (S:)
metiakhrharssaqkvrlvadlirgkkvsqaldiltytnkkaavlvkkvlesaianaeh
ndgadiddlkvtkifvdegpsmkrimprakgradrilkrtshitvvvsdr

  • Chain 'T':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7T (T:)
mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevvnt
lvvkgkvkrhgqrigrrsdwkkayvtlkegqnl

  • Chain 'U':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7U (U:)
aakirrddevivltgkdkgkrgkvknvlssgkviveginlvkkhqkpvpalnqpggivek
eaaiqvsnvaifnaatgkadrvgfrfedgkkvrffksnseti

  • Chain 'V':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7V (V:)
mftinaevrkeqgkgasrrlraankfpaiiyggkeaplaieldhdkvmnmqakaefysev
ltivvdgkeikvkaqdvqrhpykpklqhidfvra

  • Chain 'W':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7W (W:)
trngrdseakrlgvkrfggesvlagsiivrqrgtkfhaganvgcgrdhtlfakadgkvkf
evkgpknrkfisieae

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7X (X:)
srvcqvtgkrpvtgnnrshalnatkrrflpnlhshrfwvesekrfvtlrvsakgmrvidk
kgidtvlaelrargeky

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7Y (Y:)
kakelreksveelntellnllreqfnlrmqaasgqlqqshllkqvrrdvarvktllneka
ga

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7Z (Z:)
aktikitqtrsaigrlpkhkatllglglrrightveredtpairgminavsfmvkvee

  • Chain 'a':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7a (a:)
avqqnkptrskrgmrrshdaltavtslsvdktsgekhlrhhitadgyyrgrkviak

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7b (b:)
girekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeaki

  • Chain 'c':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7c (c:)
mkrtfqpsvlkrnrshgfrarmatkngrqvlarrrakgrarltvsk

  • Chain 'd':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7d (d:)
pkiktvrgaakrfkktgkggfkhkhanlrhiltkkatkrkrhlrpkamvskgdlglviac
lpya

  • Chain 'e':
    Sequence; same for both SEQRES and ATOM records:
    >6xz7e (e:)
mkvrasvkklcrnckivkrdgvirvicsaepkhkqrqg

  • Chain 'f':
    No sequence available.

  • Chain 'g':
    No sequence available.