PDB entry 6xw4

View 6xw4 on RCSB PDB site
Description: Crystal structure of murine norovirus P domain in complex with Nanobody NB-5867
Class: viral protein
Keywords: MNV, neutralizing nanobody, VHH, norovirus, VIRAL PROTEIN
Deposited on 2020-01-23, released 2020-04-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6xw4a_
  • Chain 'B':
    Compound: capsid protein
    Species: Murine norovirus 1 [TaxId:223997]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6xw4b_
  • Chain 'C':
    Compound: Nanobody NB-5867
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6XW4 (0-End)
    Domains in SCOPe 2.08: d6xw4c1, d6xw4c2, d6xw4c3
  • Chain 'D':
    Compound: Nanobody NB-5867
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6XW4 (0-End)
    Domains in SCOPe 2.08: d6xw4d1, d6xw4d2, d6xw4d3
  • Heterogens: EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6xw4A (A:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asvgsl

    Sequence, based on observed residues (ATOM records): (download) 
    >6xw4A (A:)
mvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvsc
faaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktgd
klkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipey
ndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaftv
qsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyqla
sv

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6xw4B (B:)
rmvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvs
cfaaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktg
dklkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipe
yndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaft
vqsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyql
asvgsl

    Sequence, based on observed residues (ATOM records): (download) 
    >6xw4B (B:)
mvdlpviqprlctharwpapvygllvdpslpsnpqwqngrvhvdgtllgttpisgswvsc
faaeaaykfqsgtgevatftlieqdgsayvpgdraaplgypdfsgqleievqtettktgd
klkvttfemilgpttnadqapyqgrvfasvtaaasldlvdgrvravprsiygfqdtipey
ndgllvplappigpflpgevllrfrtymrqidtadaaaeaidcalpqefvswfasnaftv
qsealllryrntltgqllfecklynegyialsysgsgpltfptdgifevvswvprlyqla
sv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6xw4C (C:)
qvqlqesggglvqaggslrlscaksgrtfrayamgwfrqapgkerefvaaidwsaaitny
adsvkgrftilrdkgmntaylqmnslepedtavyycaatystiaprtsydfwgqgtqvtv
sshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6xw4C (C:)
qvqlqesggglvqaggslrlscaksgrtfrayamgwfrqapgkerefvaaidwsaaitny
adsvkgrftilrdkgmntaylqmnslepedtavyycaatystiaprtsydfwgqgtqvtv
s

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6xw4D (D:)
qvqlqesggglvqaggslrlscaksgrtfrayamgwfrqapgkerefvaaidwsaaitny
adsvkgrftilrdkgmntaylqmnslepedtavyycaatystiaprtsydfwgqgtqvtv
sshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6xw4D (D:)
qvqlqesggglvqaggslrlscaksgrtfrayamgwfrqapgkerefvaaidwsaaitny
adsvkgrftilrdkgmntaylqmnslepedtavyycaatystiaprtsydfwgqgtqvtv
ss