PDB entry 6xvi

View 6xvi on RCSB PDB site
Description: crystal structure of megabody mb-nb207-c7hopq_a12
Deposited on 2020-01-22, released 2021-01-13
The last revision was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Outer membrane protein,Outer membrane protein,Mb-Nb207-c7HopQ_A12
    Species: HELICOBACTER PYLORI G27 [TaxId:563041]
    Gene: hopQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5Z8H1 (13-End)
      • expression tag (1-12)
    • Uniprot B5Z8H1 (Start-399)
    • PDB 6XVI (400-End)
  • Chain 'B':
    Compound: Outer membrane protein,Outer membrane protein,Mb-Nb207-c7HopQ_A12
    Species: HELICOBACTER PYLORI G27 [TaxId:563041]
    Gene: hopQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5Z8H1 (13-End)
      • expression tag (1-12)
    • Uniprot B5Z8H1 (Start-399)
    • PDB 6XVI (400-End)
  • Chain 'C':
    Compound: Outer membrane protein,Outer membrane protein,Mb-Nb207-c7HopQ_A12
    Species: HELICOBACTER PYLORI G27 [TaxId:563041]
    Gene: hopQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5Z8H1 (13-End)
      • expression tag (1-12)
    • Uniprot B5Z8H1 (Start-399)
    • PDB 6XVI (400-End)
  • Chain 'D':
    Compound: Outer membrane protein,Outer membrane protein,Mb-Nb207-c7HopQ_A12
    Species: HELICOBACTER PYLORI G27 [TaxId:563041]
    Gene: hopQ
    Database cross-references and differences (RAF-indexed):
    • Uniprot B5Z8H1 (13-End)
      • expression tag (1-12)
    • Uniprot B5Z8H1 (Start-399)
    • PDB 6XVI (400-End)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xviA (A:)
qvqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliakssssnggtnn
antpswqtagggknscatfgaefsaasdminnaqkivqetqqlsanqpknitqphnlnln
spssltalaqkmlknaqsqaeilklanqvesdfnklssghlkdyigkcdasaissanmtm
qnqknnwgngcagveetqsllktsaadfnnqtpqinqaqnlantliqelgnntyeqlsrl
ltndngtnsktsaqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgya
vicggytkspgennqkdfhytdengngttincggstnsngthsyngtntlkadknvslsi
eqyekiheayqilskalkqaglaplnskgekleahvttskpslrlscaasgrtfstaamg
wfrqapgkerdfvagiywtvgstyyadsakgrftisrdnakntvylqmdslkpedtavyy
caarrrgftlaptraneydywgqgtqvtvsshhhhhhepea

    Sequence, based on observed residues (ATOM records):
    >6xviA (A:)
vqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliatpswqtagggkn
scatfgaefsaasdminnaqkivqetqqlsanqpknitqphnlnlnspssltalaqkmlk
naqsqaeilklanqvesdfnklssghlkdyigkcnnwgngcagveetqsllktsaadfnn
qtpqinqaqnlantliqesktsaqainqavnnlneraktlaggttnspayqatllalrsv
lglwnsmgyavicggytkspgennqkdfhytgttincgglkadknvslsieqyekiheay
qilskalkqaglaplnskgekleahvttskpslrlscaasstaamgwfrqapgkerdfva
giywtvgstyyadsakgrftisrdnakntvylqmdslkpedtavyycaarrrgftlaptr
aneydywgqgtqvtvss

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xviB (B:)
qvqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliakssssnggtnn
antpswqtagggknscatfgaefsaasdminnaqkivqetqqlsanqpknitqphnlnln
spssltalaqkmlknaqsqaeilklanqvesdfnklssghlkdyigkcdasaissanmtm
qnqknnwgngcagveetqsllktsaadfnnqtpqinqaqnlantliqelgnntyeqlsrl
ltndngtnsktsaqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgya
vicggytkspgennqkdfhytdengngttincggstnsngthsyngtntlkadknvslsi
eqyekiheayqilskalkqaglaplnskgekleahvttskpslrlscaasgrtfstaamg
wfrqapgkerdfvagiywtvgstyyadsakgrftisrdnakntvylqmdslkpedtavyy
caarrrgftlaptraneydywgqgtqvtvsshhhhhhepea

    Sequence, based on observed residues (ATOM records):
    >6xviB (B:)
vqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliantpswqtagggk
nscatfgaefsaasdminnaqkivqetqqlsanqppssltalaqkmlknaqsqaeilkla
nqvesdfnklssghlkdyigkcdnnwgngcagveetqsllktsaadfnnqtpqinqaqnl
antlisaqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgyavicggy
tkspgennqkdfhytgngttincggtlkadknvslsieqyekiheayqilskalkqagla
plnskgekleahvttskpslrlscaasfstaamgwfrqapgkerdfvagiywtvgstyya
dsakgrftisrdnakntvylqmdslkpedtavyycaarrrgftlaptraneydywgqgtq
vtvs

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xviC (C:)
qvqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliakssssnggtnn
antpswqtagggknscatfgaefsaasdminnaqkivqetqqlsanqpknitqphnlnln
spssltalaqkmlknaqsqaeilklanqvesdfnklssghlkdyigkcdasaissanmtm
qnqknnwgngcagveetqsllktsaadfnnqtpqinqaqnlantliqelgnntyeqlsrl
ltndngtnsktsaqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgya
vicggytkspgennqkdfhytdengngttincggstnsngthsyngtntlkadknvslsi
eqyekiheayqilskalkqaglaplnskgekleahvttskpslrlscaasgrtfstaamg
wfrqapgkerdfvagiywtvgstyyadsakgrftisrdnakntvylqmdslkpedtavyy
caarrrgftlaptraneydywgqgtqvtvsshhhhhhepea

    Sequence, based on observed residues (ATOM records):
    >6xviC (C:)
vqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliantpswqtagggk
nscatfgaefsaasdminnaqkivqetqqlsanqpknitssltalaqkmlknaqsqaeil
klanqvesdfnklssghlkdyigkcdnnwgngcagveetqsllktsaadfnnqtpqinqa
qnlantlisaqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgyavic
ggytkspgennqkdfhytdengngttincggtlkadknvslsieqyekiheayqilskal
kqaglaplnskgekleahvttskpslrlscaasgrtaamgwfrqapgkerdfvagiywtv
gstyyadsakgrftisrdnakntvylqmdslkpedtavyycaarrrgftlaptraneydy
wgqgtqvtvs

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xviD (D:)
qvqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliakssssnggtnn
antpswqtagggknscatfgaefsaasdminnaqkivqetqqlsanqpknitqphnlnln
spssltalaqkmlknaqsqaeilklanqvesdfnklssghlkdyigkcdasaissanmtm
qnqknnwgngcagveetqsllktsaadfnnqtpqinqaqnlantliqelgnntyeqlsrl
ltndngtnsktsaqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgya
vicggytkspgennqkdfhytdengngttincggstnsngthsyngtntlkadknvslsi
eqyekiheayqilskalkqaglaplnskgekleahvttskpslrlscaasgrtfstaamg
wfrqapgkerdfvagiywtvgstyyadsakgrftisrdnakntvylqmdslkpedtavyy
caarrrgftlaptraneydywgqgtqvtvsshhhhhhepea

    Sequence, based on observed residues (ATOM records):
    >6xviD (D:)
vqlvesggglvrktttsvidttndaqnlltqaqtivntlkdycpiliatpswqtagggkn
scatfgaefsaasdminnaqkivqetqqlsanspssltalaqkmlknaqsqaeilklanq
vesdfnklssghlkdyigkcdnnwgngcagveetqsllktsaadfnnqtpqinqaqnlan
tlqainqavnnlneraktlaggttnspayqatllalrsvlglwnsmgyavicggytkspg
ennqkdfhytdengngttincglkadknvslsieqyekiheayqilskalkqaglaplns
kgekleahvttskpslrlscaastaamgwfrqapgkerdfvagiywtvgstyyadsakgr
ftisrdnakntvylqmdslkpedtavyycaarrrgftlaptraneydywgqgtqvtvs