PDB entry 6xup

View 6xup on RCSB PDB site
Description: archaeoglobus fulgidus argonaute protein with dna oligoduplex 5'- patcgtggccacgat
Deposited on 2020-01-20, released 2021-02-03
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.42 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Piwi protein
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Piwi protein
    Species: Archaeoglobus fulgidus [TaxId:2234]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 5'-d(*ap*tp*cp*gp*tp*gp*gp*cp*cp*ap*cp*gp*ap*tp)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'Q':
    Compound: 5'-d(*ap*tp*cp*gp*tp*gp*gp*cp*cp*ap*cp*gp*ap*tp)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'R':
    Compound: 5'-d(*ap*tp*cp*gp*tp*gp*gp*cp*cp*ap*cp*gp*ap*tp)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'S':
    Compound: 5'-d(*ap*tp*cp*gp*tp*gp*gp*cp*cp*ap*cp*gp*ap*tp)-3'
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: MG, CL, BME, GOL, CAC, K, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xupA (A:)
mgsshhhhhhsqdpmmeykivengltyrigngasvpisntgelikglrnygpyevpslky
nqialihnnqfsslinqlksqisskidevwhihninisefiydsphfdsiksqvdnaidt
gvdgimlvlpeyntplyyklksylinsipsqfmrydilsnrnltfyvdnllvqfvsklgg
kpwilnvdpekgsdiiigtgatridnvnlfcfamvfkkdgtmlwneispivtsseyltyl
kstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvk
yailhlnethpfwvmgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikpl
sveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnr
yggypinpegnrslqtnpwfl

    Sequence, based on observed residues (ATOM records):
    >6xupA (A:)
gltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfsslinqlksqis
skidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksy
linsipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsdiiigtgatr
idnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekl
tlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwvmpyegtkvk
lsskrylltllqpmvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsr
nlpvtvnypklvagiianvnryggypinpegnrslqtnpwfl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xupB (B:)
mgsshhhhhhsqdpmmeykivengltyrigngasvpisntgelikglrnygpyevpslky
nqialihnnqfsslinqlksqisskidevwhihninisefiydsphfdsiksqvdnaidt
gvdgimlvlpeyntplyyklksylinsipsqfmrydilsnrnltfyvdnllvqfvsklgg
kpwilnvdpekgsdiiigtgatridnvnlfcfamvfkkdgtmlwneispivtsseyltyl
kstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketveelkkqemvsrdvk
yailhlnethpfwvmgdpnnrfhpyegtkvklsskrylltllqpylkrnglemvtpikpl
sveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnr
yggypinpegnrslqtnpwfl

    Sequence, based on observed residues (ATOM records):
    >6xupB (B:)
gltyrigngasvpisntgelikglrnygpyevpslkynqialihnnqfsslinqlksqis
skidevwhihninisefiydsphfdsiksqvdnaidtgvdgimlvlpeyntplyyklksy
linsipsqfmrydilsnrnltfyvdnllvqfvsklggkpwilnvdpekgsdiiigtgatr
idnvnlfcfamvfkkdgtmlwneispivtsseyltylkstikkvvygfkksnpdwdvekl
tlhvsgkrpkmkdgetkilketveelkkqemvsrdvkyailhlnethpfwvmpyegtkvk
lsskrylltllqmvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrn
lpvtvnypklvagiianvnryggypinpegnrslqtnpwfl

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'S':
    No sequence available.