PDB entry 6xsz

View 6xsz on RCSB PDB site
Description: the structure of the m60 catalytic domain from clostridium perfringens zmpc
Deposited on 2020-07-16, released 2021-02-03
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2.25 Å
R-factor: N/A
AEROSPACI score: 0.32 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ZmpC Glycopeptidase
    Species: Clostridium perfringens [TaxId:1502]
    Gene: CP4_3468
    Database cross-references and differences (RAF-indexed):
    • Uniprot F8UNJ8 (23-530)
      • expression tag (21-22)
  • Chain 'B':
    Compound: ZmpC Glycopeptidase
    Species: Clostridium perfringens [TaxId:1502]
    Gene: CP4_3468
    Database cross-references and differences (RAF-indexed):
    • Uniprot F8UNJ8 (23-530)
      • expression tag (22)
  • Chain 'C':
    Compound: ZmpC Glycopeptidase
    Species: Clostridium perfringens [TaxId:1502]
    Gene: CP4_3468
    Database cross-references and differences (RAF-indexed):
    • Uniprot F8UNJ8 (23-530)
      • expression tag (22)
  • Chain 'D':
    Compound: ZmpC Glycopeptidase
    Species: Clostridium perfringens [TaxId:1502]
    Gene: CP4_3468
    Database cross-references and differences (RAF-indexed):
    • Uniprot F8UNJ8 (23-End)
      • expression tag (20-22)
  • Heterogens: ZN, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xszA (A:)
mgsshhhhhhssglvprgshmasvielemrgnsvqeanyrkmwgfqdwqvtglsalagdk
itvyvdveegeptptllyrqtmtqhggaktfqlqngkneivipeldktsngisegtiqgg
elfftnynsdsqtrapkiriegakeypvfvlgesdedkvikeleayvekiekepettpdi
favssnkslsltqatyalewyknnnktpkytaeswdkivenamdfwgydnsselnsdfnf
rimpmvknltggafmnahsgvigirpgnqncivgadmgwgtmhelghnfdtsgrtiaevt
nnimplyfeslnrtqtritdqniwenntypkvglddysnnklyntsdsthlaqlaplwql
ylydntfygkfeqqfrannygnktrediykswvvaasnamqldlteffarhgirindeva
qeisskyekpdkkiyylndlainyegngftenaqvdikttnsdgkvklvfsineedkdnl
lgyeirkdgkyigftskdsfvdtssnleddavytvtpydiklntlnaievd

    Sequence, based on observed residues (ATOM records):
    >6xszA (A:)
asvielemrgnsvqeanyrkmwgfqdwqvtglsalagdkitvyvdveegeptptllyrqt
mtqhggaktfqlqngkneivipeldktsngisegtiqggelfftnynsdsqtrapkirie
gakeypvfvlgesdedkvikeleayvekiekepettpdifavssnkslsltqatyalewy
knnnktpkytaeswdkivenamdfwgydnsselnsdfnfrimpmvknltggafmnahsgv
igirpgnqncivgadmgwgtmhelghnfdtsgrtiaevtnnimplyfeslnrtqtritdq
niwenntypkvglddysnnklyntsdsthlaqlaplwqlylydntfygkfeqqfrannyg
nktrediykswvvaasnamqldlteffarhgirindevaqeisskyekpdkkiyylndla
inyegngftenaqvdikttnsdgkvklvfsineedkdnllgyeirkdgkyigftskdsfv
dtssnleddavytvtpydiklntlnaievd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xszB (B:)
mgsshhhhhhssglvprgshmasvielemrgnsvqeanyrkmwgfqdwqvtglsalagdk
itvyvdveegeptptllyrqtmtqhggaktfqlqngkneivipeldktsngisegtiqgg
elfftnynsdsqtrapkiriegakeypvfvlgesdedkvikeleayvekiekepettpdi
favssnkslsltqatyalewyknnnktpkytaeswdkivenamdfwgydnsselnsdfnf
rimpmvknltggafmnahsgvigirpgnqncivgadmgwgtmhelghnfdtsgrtiaevt
nnimplyfeslnrtqtritdqniwenntypkvglddysnnklyntsdsthlaqlaplwql
ylydntfygkfeqqfrannygnktrediykswvvaasnamqldlteffarhgirindeva
qeisskyekpdkkiyylndlainyegngftenaqvdikttnsdgkvklvfsineedkdnl
lgyeirkdgkyigftskdsfvdtssnleddavytvtpydiklntlnaievd

    Sequence, based on observed residues (ATOM records):
    >6xszB (B:)
svielemrgnsvqeanyrkmwgfqdwqvtglsalagdkitvyvdveegeptptllyrqtm
tqhggaktfqlqngkneivipeldktsngisegtiqggelfftnynsdsqtrapkirieg
akeypvfvlgesdedkvikeleayvekiekepettpdifavssnkslsltqatyalewyk
nnnktpkytaeswdkivenamdfwgydnsselnsdfnfrimpmvknltggafmnahsgvi
girpgnqncivgadmgwgtmhelghnfdtsgrtiaevtnnimplyfeslnrtqtritdqn
iwenntypkvglddysnnklyntsdsthlaqlaplwqlylydntfygkfeqqfrannygn
ktrediykswvvaasnamqldlteffarhgirindevaqeisskyekpdkkiyylndlai
nyegngftenaqvdikttnsdgkvklvfsineedkdnllgyeirkdgkyigftskdsfvd
tssnleddavytvtpydiklntlnaievd

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xszC (C:)
mgsshhhhhhssglvprgshmasvielemrgnsvqeanyrkmwgfqdwqvtglsalagdk
itvyvdveegeptptllyrqtmtqhggaktfqlqngkneivipeldktsngisegtiqgg
elfftnynsdsqtrapkiriegakeypvfvlgesdedkvikeleayvekiekepettpdi
favssnkslsltqatyalewyknnnktpkytaeswdkivenamdfwgydnsselnsdfnf
rimpmvknltggafmnahsgvigirpgnqncivgadmgwgtmhelghnfdtsgrtiaevt
nnimplyfeslnrtqtritdqniwenntypkvglddysnnklyntsdsthlaqlaplwql
ylydntfygkfeqqfrannygnktrediykswvvaasnamqldlteffarhgirindeva
qeisskyekpdkkiyylndlainyegngftenaqvdikttnsdgkvklvfsineedkdnl
lgyeirkdgkyigftskdsfvdtssnleddavytvtpydiklntlnaievd

    Sequence, based on observed residues (ATOM records):
    >6xszC (C:)
svielemrgnsvqeanyrkmwgfqdwqvtglsalagdkitvyvdveegeptptllyrqtm
tqhggaktfqlqngkneivipeldktsngisegtiqggelfftnynsdsqtrapkirieg
akeypvfvlgesdedkvikeleayvekiekepettpdifavssnkslsltqatyalewyk
nnnktpkytaeswdkivenamdfwgydnsselnsdfnfrimpmvknltggafmnahsgvi
girpgnqncivgadmgwgtmhelghnfdtsgrtiaevtnnimplyfeslnrtqtritdqn
iwenntypkvglddysnnklyntsdsthlaqlaplwqlylydntfygkfeqqfrannygn
ktrediykswvvaasnamqldlteffarhgirindevaqeisskyekpdkkiyylndlai
nyegngftenaqvdikttnsdgkvklvfsineedkdnllgyeirkdgkyigftskdsfvd
tssnleddavytvtpydiklntlnaievd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xszD (D:)
mgsshhhhhhssglvprgshmasvielemrgnsvqeanyrkmwgfqdwqvtglsalagdk
itvyvdveegeptptllyrqtmtqhggaktfqlqngkneivipeldktsngisegtiqgg
elfftnynsdsqtrapkiriegakeypvfvlgesdedkvikeleayvekiekepettpdi
favssnkslsltqatyalewyknnnktpkytaeswdkivenamdfwgydnsselnsdfnf
rimpmvknltggafmnahsgvigirpgnqncivgadmgwgtmhelghnfdtsgrtiaevt
nnimplyfeslnrtqtritdqniwenntypkvglddysnnklyntsdsthlaqlaplwql
ylydntfygkfeqqfrannygnktrediykswvvaasnamqldlteffarhgirindeva
qeisskyekpdkkiyylndlainyegngftenaqvdikttnsdgkvklvfsineedkdnl
lgyeirkdgkyigftskdsfvdtssnleddavytvtpydiklntlnaievd

    Sequence, based on observed residues (ATOM records):
    >6xszD (D:)
masvielemrgnsvqeanyrkmwgfqdwqvtglsalagdkitvyvdveegeptptllyrq
tmtqhggaktfqlqngkneivipeldktsngisegtiqggelfftnynsdsqtrapkiri
egakeypvfvlgesdedkvikeleayvekiekepettpdifavssnkslsltqatyalew
yknnnktpkytaeswdkivenamdfwgydnsselnsdfnfrimpmvknltggafmnahsg
vigirpgnqncivgadmgwgtmhelghnfdtsgrtiaevtnnimplyfeslnrtqtritd
qniwenntypkvglddysnnklyntsdsthlaqlaplwqlylydntfygkfeqqfranny
gnktrediykswvvaasnamqldlteffarhgirindevaqeisskyekpdkkiyylndl
ainyegngftenaqvdikttnsdgkvklvfsineedkdnllgyeirkdgkyigftskdsf
vdtssnleddavytvtpydiklntlnaiev