PDB entry 6xma

View 6xma on RCSB PDB site
Description: crystal structure of iron-bound lsd4 from sphingobium sp. strain syk-6
Deposited on 2020-06-29, released 2021-05-12
The last revision was dated 2021-07-21, with a file datestamp of 2021-07-16.
Experiment type: XRAY
Resolution: 1.45 Å
R-factor: N/A
AEROSPACI score: 0.58 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Dioxygenase
    Species: Sphingobium sp. (strain NBRC 103272 / SYK-6) [TaxId:627192]
    Gene: SLG_12860
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FE, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xmaA (A:)
    mahfpdtpaftgfnapsriecdipnlvhegtippelngaffrvqpdpqfpprlgddisfn
    gdgmitrfhihdgqcdikqrwaktnkwklenaagkalfgsyrnpltddesvkgeyrstan
    tnafvfagklwamkedspsltmdpatmetfgfekfggkmtgqtftahpkvdpltgnmvai
    gyaasglctddvclyeispdgeliyeawfkvpyycmmhdfgvtkdylvlhivpsigswdr
    lekglphfgfdttlpvylgiiprradlkqedirwfkrencfashvmnafqegtkvhvdvp
    eaennmfpffpdvhgapfnpqqamsrltrwtvdmasnsdefdsvtrltetagefpriddr
    mtglpyrygwmlemdmkrpvelkggsaggflmnclflkdhqtgaeqhwwcgptsslqepa
    fiprskdapegdgwivqvcnrladhksdllifealdiekgpvatvhlpfalrfglhgnwa
    naeeiglaa
    

    Sequence, based on observed residues (ATOM records):
    >6xmaA (A:)
    ahfpdtpaftgfnapsriecdipnlvhegtippelngaffrvqpdpqfpprlgddisfng
    dgmitrfhihdgqcdikqrwaktnkwklenaagkalfgsyrnpltddesvkgeyrstant
    nafvfagklwamkedspsltmdpatmetfgfekfggkmtgqtftahpkvdpltgnmvaig
    yaasglctddvclyeispdgeliyeawfkvpyycmmhdfgvtkdylvlhivpsigswdrl
    ekglphfgfdttlpvylgiiprradlkqedirwfkrencfashvmnafqegtkvhvdvpe
    aennmfpffpdvhgapfnpqqamsrltrwtvdmasnsdefdsvtrltetagefpriddrm
    tglpyrygwmlemdmkrpvelmnclflkdhqtgaeqhwwcgptsslqepafiprskdape
    gdgwivqvcnrladhksdllifealdiekgpvatvhlpfalrfglhgnwanaeeiglaa