PDB entry 6xlz

View 6xlz on RCSB PDB site
Description: Structure of NHP D11A.F2 Fab in complex with 16055 V2b peptide
Class: immune system
Keywords: Fab, HIV, V1V2, Complex, Antibody, Scaffold, ANTIVIRAL PROTEIN-IMMUNE SYSTEM complex, IMMUNE SYSTEM
Deposited on 2020-06-29, released 2021-07-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: NHP_D11A.F2_Fab_Heavy_chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6XLZ (0-221)
    Domains in SCOPe 2.08: d6xlzh_
  • Chain 'L':
    Compound: NHP_D11A.F2_Fab_Light_Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6XLZ (0-216)
    Domains in SCOPe 2.08: d6xlzl1, d6xlzl2
  • Chain 'P':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
  • Heterogens: BU3, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6xlzH (H:)
qlqlqesgpglvkpsetlsltctvsdgsirdywwnwirqppgkglewigridsvvntyyn
pslksrvtlsvdtsknqvslrlssvtaadtavyycarpycpgsacydswgqgvlvtvssa
stkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >6xlzH (H:)
qlqlqesgpglvkpsetlsltctvsdgsirdywwnwirqppgkglewigridsvvntyyn
pslksrvtlsvdtsknqvslrlssvtaadtavyycarpycpgsacydswgqgvlvtvssa
stkgpsvfplapsgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslss
vvtvpssslgtqtyicnvnhkpsntkvdkrvepk

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6xlzL (L:)
evvftqphsvsgspgqtvtisctrssgsldseyvqwyqqrpgraptiviyrdnqrpsgvp
drfsgsidsssnsaslaisglksedeadyycqsaddsynwvfgggtrltvlsqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6xlzL (L:)
evvftqphsvsgspgqtvtisctrssgsldseyvqwyqqrpgraptiviyrdnqrpsgvp
drfsgsidsssnsaslaisglksedeadyycqsaddsynwvfgggtrltvlsqpkaapsv
tlfppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaas
sylsltpeqwkshrsyscqvthegstvektvapt

  • Chain 'P':
    No sequence available.