PDB entry 6xln

View 6xln on RCSB PDB site
Description: cryo-em structure of e. coli rnap-dna elongation complex 2 (rde2) in ecmrr-dependent transcription
Deposited on 2020-06-28, released 2021-04-07
The last revision was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: EM
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoA, Z4665, ECs4160
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoA, Z4665, ECs4160
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoB, ECS88_4448
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoC, Z5561, ECs4911
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli O157:H7 [TaxId:83334]
    Gene: rpoZ, ECS88_4064
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: synthetic non-template strand DNA (54-MER)
    Species: Escherichia coli O157:H7, synthetic [TaxId:83334]
  • Chain 'R':
    Compound: 9-nt RNA transcript
    Species: Escherichia coli O157:H7 [TaxId:83334]
  • Chain 'T':
    Compound: synthetic template strand DNA (54-mer)
    Species: Escherichia coli O157:H7, synthetic [TaxId:83334]
  • Heterogens: 1N7, MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xlnA (A:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6xlnA (A:)
    vteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgv
    lheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveiv
    kpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveria
    ynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xlnB (B:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6xlnB (B:)
    svteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidg
    vlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdvei
    vkpqhvichltdenasismrikvqrgrgyvpastrigrllvdacyspveriaynveaarv
    eqrtdldklviemetngtidpeeairraatilaeqleafvdl
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xlnC (C:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6xlnC (C:)
    ysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsy
    sgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqev
    ymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrgs
    wldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmelv
    perlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyi
    destgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsa
    lveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilsk
    ddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlslg
    dldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltrer
    agfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtde
    ihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvs
    vgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrgg
    vvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdv
    ladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrd
    tklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekll
    raifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlse
    elqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelk
    hefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpi
    edmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklr
    efiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklg
    dlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggk
    aqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpes
    fnvllkeirslginieled
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xlnD (D:)
    mkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdne
    

    Sequence, based on observed residues (ATOM records):
    >6xlnD (D:)
    efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
    krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
    ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
    qeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpl
    dggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgra
    itgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmale
    lfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiq
    afepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspan
    gepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvritey
    ekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglk
    ptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvta
    gerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaa
    qirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgy
    ltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtad
    ilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeai
    gviaaqsigepgtqltmssiqvknkgsiklsnvksvvnssgklvitsrntelklidefgr
    tkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqt
    deltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqle
    dgvqissgdtlaripqgglprvadlfearrpkepailaeisgivsfgketkgkrrlvitp
    vdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqd
    vyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvg
    atysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipa
    gtgyayhqdrmrrraa
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6xlnE (E:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6xlnE (E:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqeqeaael
    

  • Chain 'N':
    No sequence available.

  • Chain 'R':
    No sequence available.

  • Chain 'T':
    No sequence available.