PDB entry 6xkx

View 6xkx on RCSB PDB site
Description: r. capsulatus ciii2civ tripartite super-complex, conformation a (sc- 1a)
Deposited on 2020-06-27, released 2020-12-30
The last revision was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: EM
Resolution: 6.1 Å
R-factor: N/A
AEROSPACI score: 0.04 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: cytochrome b
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petB, cytB, RCAP_rcc02769
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: cytochrome c1
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petC, RCAP_rcc02770
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ubiquinol-cytochrome c reductase iron-sulfur subunit
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petA, fbcF, RCAP_rcc02768
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: cytochrome b
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petB, cytB, RCAP_rcc02769
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: cytochrome c1
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petC, RCAP_rcc02770
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: ubiquinol-cytochrome c reductase iron-sulfur subunit
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petA, fbcF, RCAP_rcc02768
    Database cross-references and differences (RAF-indexed):
  • Chain 'n':
    Compound: Cytochrome c oxidase, Cbb3-type, subunit I
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Database cross-references and differences (RAF-indexed):
  • Chain 'o':
    Compound: Cytochrome c oxidase, Cbb3-type, subunit II
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Database cross-references and differences (RAF-indexed):
  • Chain 'p':
    Compound: Cbb3-type cytochrome c oxidase subunit CcoP,Cytochrome c-type cyt cy
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: cycY, RCAP_rcc02501
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FES, HEC, CU

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xkxC (C:)
msgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqiv
tgivlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygs
ykapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawl
lggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtskadaekd
tlpfwpyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflp
fyailrafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayr
pkfrmwfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepi
pasieedfnshygnpae

    Sequence, based on observed residues (ATOM records):
    >6xkxC (C:)
sgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqivt
givlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygsy
kapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawll
ggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtaekdtlpfw
pyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflpfyail
rafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayrpkfrm
wfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepipasie
edf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xkxD (D:)
mkkllisavsalvlgsgaafansnvpdhafsfegifgkydqaqlrrgfqvynevcsachg
mkfvpirtladdggpqldptfvreyaagldtiidkdsgeerdrketdmfptrvgdgmgpd
lsvmakaragfsgpagsgmnqlfkgmggpeyiynyvigfeenpecapegidgyyynktfq
iggvpdtckdaagvkithgswarmppplvddqvtyedgtpatvdqmaqdvsaflmwaaep
klvarkqmglvamvmlgllsvmlyltnkrlwapykghka

    Sequence, based on observed residues (ATOM records):
    >6xkxD (D:)
pdhafsfegifgkydqaqlrrgfqvynevcsachgmkfvpirtladdggpqldptfvrey
aagldtiidkdsgeerdrketdmfptrvgdgmgpdlsvmakarggpeyiynyvigfeenp
ecapegidgyyynktfqiggvpdtckdaagvkithgswarmppplvddqvtyedgtpatv
dqmaqdvsaflmwaaepklvarkqmglvamvmlgllsvmlyltnkrlwapykghk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6xkxE (E:)
mshaednagtrrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevg
tqltvkwrgkpvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdg
tntgewlvmlgvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipva
afvdettiklg

    Sequence, based on observed residues (ATOM records):
    >6xkxE (E:)
rrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevgtqltvkwrgk
pvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdgtntgewlvml
gvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipvaafvdettikl
g

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6xkxP (P:)
msgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqiv
tgivlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygs
ykapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawl
lggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtskadaekd
tlpfwpyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflp
fyailrafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayr
pkfrmwfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepi
pasieedfnshygnpae

    Sequence, based on observed residues (ATOM records):
    >6xkxP (P:)
sgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqivt
givlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygsy
kapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawll
ggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtaekdtlpfw
pyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflpfyail
rafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayrpkfrm
wfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepipasie
edf

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6xkxQ (Q:)
mkkllisavsalvlgsgaafansnvpdhafsfegifgkydqaqlrrgfqvynevcsachg
mkfvpirtladdggpqldptfvreyaagldtiidkdsgeerdrketdmfptrvgdgmgpd
lsvmakaragfsgpagsgmnqlfkgmggpeyiynyvigfeenpecapegidgyyynktfq
iggvpdtckdaagvkithgswarmppplvddqvtyedgtpatvdqmaqdvsaflmwaaep
klvarkqmglvamvmlgllsvmlyltnkrlwapykghka

    Sequence, based on observed residues (ATOM records):
    >6xkxQ (Q:)
pdhafsfegifgkydqaqlrrgfqvynevcsachgmkfvpirtladdggpqldptfvrey
aagldtiidkdsgeerdrketdmfptrvgdgmgpdlsvmakarggpeyiynyvigfeenp
ecapegidgyyynktfqiggvpdtckdaagvkithgswarmppplvddqvtyedgtpatv
dqmaqdvsaflmwaaepklvarkqmglvamvmlgllsvmlyltnkrlwapykghk

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6xkxR (R:)
mshaednagtrrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevg
tqltvkwrgkpvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdg
tntgewlvmlgvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipva
afvdettiklg

    Sequence, based on observed residues (ATOM records):
    >6xkxR (R:)
rrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevgtqltvkwrgk
pvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdgtntgewlvml
gvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipvaafvdettikl
g

  • Chain 'n':
    Sequence, based on SEQRES records:
    >6xkxn (n:)
mwdyvklvalgvvvaiaayaasqardlpymvnmvevalaaviafiwvlrtmgdakpskde
yfdgviragviattfwgivgflvaviiafqlafpalnlefgngmlnfgrlrplhtsavif
afggnaliasafyvvqrtsaarlfggtalgwfvfwgwqliivtaatsyllggsqgkeyae
lnwhldilvaivwvayliaflgtifkrkephiyvanwfylsfivtiamlhivnnlavpvs
ifgtksvqlmagvqdamtqwwyghnavgffltagflgmmyyfvpkqaerpvysyklsivh
fwaliflyiwagphhlhytalpdwastlgmvmsvilwmpswggminglmtlsgawdklrt
dpvirmmvvsigfygmstfegpmmsikavnslshytdwtighvhsgalgwngmitfgmly
fltprlwgrsglyslklvswhfwlatigivlyassmwvsgimeglmwrevdaqgflvngf
adtvgakfpmnvvrgvggvlyltgglimaynlwatvakqpktanlavavpae

    Sequence, based on observed residues (ATOM records):
    >6xkxn (n:)
skdeyfdgviragviattfwgivgflvaviiafqlafpalnlefgngmlnfgrlrplhts
avifafggnaliasafyvvqrtsaarlfggtalgwfvfwgwqliivtaatsyllggsqgk
eyaelnwhldilvaivwvayliaflgtifkrkephiyvanwfylsfivtiamlhivnnla
vpvsifgtksvqlmagvqdamtqwwyghnavgffltagflgmmyyfvpkqaerpvysykl
sivhfwaliflyiwagphhlhytalpdwastlgmvmsvilwmpswggminglmtlsgawd
klrtdpvirmmvvsigfygmstfegpmmsikavnslshytdwtighvhsgalgwngmitf
gmlyfltprlwgrsglyslklvswhfwlatigivlyassmwvsgimeglmwrevdaqgfl
vngfadtvgakfpmnvvrgvggvlyltgglimaynlwatvakqpktanlav

  • Chain 'o':
    Sequence, based on SEQRES records:
    >6xkxo (o:)
msimdkhhvleknatlllifaflvvtiggiveiaplfylentiekvegmrpytpleltgr
diyiregcyvchsqmirpmrdeveryghyslaaesmydhpfqwgskrtgpdlarvggrys
dawhvehlsnpqsvvpesvmpsysylanvpldstwiedrvstdalvgvpysaemiaaaka
dfvaqadpnadsatlvanygekvnirnfdgkpgltemdalvaylqvlgtmvdfstfqpva
sr

    Sequence, based on observed residues (ATOM records):
    >6xkxo (o:)
vleknatlllifaflvvtiggiveiaplfylentiekvegmrpytpleltgrdiyiregc
yvchsqmirpmrdeveryghyslaaesmydhpfqwgskrtgpdlarvggrysdawhvehl
snpqsvvpesvmpsysylanvpldstwiedrvstdalvgvpysaemiaaatemdalvayl
qvlgtmvdfs

  • Chain 'p':
    Sequence, based on SEQRES records:
    >6xkxp (p:)
mskkpttkkevqttghswdgieelntplprwwlwtfyativwgvaysiampawpifasga
tpgilgsstradvekdiakfaemnkavedklvatdltaiaadpelvtytrnagaavfrtw
caqchgagaggntgfpslldgdwlhggsietiytnikhgirdpldpdtlpvanmpahltd
ellepaqiddvvqyvlkisgqpadearatagqqvfadncvschgedakgmvemgapnltd
giwlyggdantitttiqlgrggvmpswswaadgakprlseaqiravasyvhslgggqlfa
trpatavavgadgkallpsvdeaampakapaaaapaaetaeaaapaepaappppayvevd
patitgdakageekfnktckachkidgknavgphlngvigratatvegfkystamknhvg
nwtperldiylvspkaevpgtkmsfvglpeaadranviaylntlprdykddddk

    Sequence, based on observed residues (ATOM records):
    >6xkxp (p:)
ttghswdgieelntplprwwlwtfyativwgvaysiampaatpgilgsstradvekdiak
faemnkavedklvatdltaiaadpelvtytrnagaavfrtwcaqchgagaggntgfpsll
dgdwlhggsietiytnikhgimpahltdellepaqiddvvqyvlkisgqpadearatagq
qvfadncvschgedakgmvemgapnltdgiwlyggdantitttiqlgrggvmpswswaaa
qiravasyvhslgg