PDB entry 6xkv

View 6xkv on RCSB PDB site
Description: r. capsulatus cyt bc1 with both fes proteins in b position (ciii2 b-b)
Deposited on 2020-06-27, released 2020-12-30
The last revision was dated 2021-07-14, with a file datestamp of 2021-07-09.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'C':
    Compound: cytochrome b
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petB, cytB, RCAP_rcc02769
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: cytochrome c1
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petC, RCAP_rcc02770
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ubiquinol-cytochrome c reductase iron-sulfur subunit
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petA, fbcF, RCAP_rcc02768
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: cytochrome b
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petB, cytB, RCAP_rcc02769
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: cytochrome c1
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petC, RCAP_rcc02770
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: ubiquinol-cytochrome c reductase iron-sulfur subunit
    Species: Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) [TaxId:272942]
    Gene: petA, fbcF, RCAP_rcc02768
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HEC, FES

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xkvC (C:)
msgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqiv
tgivlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygs
ykapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawl
lggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtskadaekd
tlpfwpyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflp
fyailrafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayr
pkfrmwfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepi
pasieedfnshygnpae

    Sequence, based on observed residues (ATOM records):
    >6xkvC (C:)
sgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqivt
givlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygsy
kapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawll
ggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtaekdtlpfw
pyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflpfyail
rafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayrpkfrm
wfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepipasie
edf

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xkvD (D:)
mkkllisavsalvlgsgaafansnvpdhafsfegifgkydqaqlrrgfqvynevcsachg
mkfvpirtladdggpqldptfvreyaagldtiidkdsgeerdrketdmfptrvgdgmgpd
lsvmakaragfsgpagsgmnqlfkgmggpeyiynyvigfeenpecapegidgyyynktfq
iggvpdtckdaagvkithgswarmppplvddqvtyedgtpatvdqmaqdvsaflmwaaep
klvarkqmglvamvmlgllsvmlyltnkrlwapykghka

    Sequence, based on observed residues (ATOM records):
    >6xkvD (D:)
pdhafsfegifgkydqaqlrrgfqvynevcsachgmkfvpirtladdggpqldptfvrey
aagldtiidkdsgeerdrketdmfptrvgdgmgpdlsvmakarggpeyiynyvigfeenp
ecapegidgyyynktfqiggvpdtckdaagvkithgswarmppplvddqvtyedgtpatv
dqmaqdvsaflmwaaepklvarkqmglvamvmlgllsvmlyltnkrlwapykghk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6xkvE (E:)
mshaednagtrrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevg
tqltvkwrgkpvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdg
tntgewlvmlgvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipva
afvdettiklg

    Sequence, based on observed residues (ATOM records):
    >6xkvE (E:)
rrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevgtqltvkwrgk
pvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdgtntgewlvml
gvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipvaafvdettikl
g

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6xkvP (P:)
msgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqiv
tgivlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygs
ykapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawl
lggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtskadaekd
tlpfwpyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflp
fyailrafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayr
pkfrmwfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepi
pasieedfnshygnpae

    Sequence, based on observed residues (ATOM records):
    >6xkvP (P:)
sgiphdhyepktgiekwlhdrlpivglvydtimiptpknlnwwwiwgivlaftlvlqivt
givlamhytphvdlafasvehimrdvnggwamryihangaslfflavyihifrglyygsy
kapreitwivgmviyllmmgtafmgyvlpwgqmsfwgatvitglfgaipgigpsiqawll
ggpavdnatlnrffslhyllpfviaalvaihiwafhttgnnnptgvevrrtaekdtlpfw
pyfvikdlfalalvllgffavvaympnylghpdnyvqanplstpahivpewyflpfyail
rafaadvwvvilvdgltfgivdakffgviamfgaiavmalapwldtskvrsgayrpkfrm
wfwflvldfvvltwvgampteypydwisliastywfayflvilpllgatekpepipasie
edf

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6xkvQ (Q:)
mkkllisavsalvlgsgaafansnvpdhafsfegifgkydqaqlrrgfqvynevcsachg
mkfvpirtladdggpqldptfvreyaagldtiidkdsgeerdrketdmfptrvgdgmgpd
lsvmakaragfsgpagsgmnqlfkgmggpeyiynyvigfeenpecapegidgyyynktfq
iggvpdtckdaagvkithgswarmppplvddqvtyedgtpatvdqmaqdvsaflmwaaep
klvarkqmglvamvmlgllsvmlyltnkrlwapykghka

    Sequence, based on observed residues (ATOM records):
    >6xkvQ (Q:)
pdhafsfegifgkydqaqlrrgfqvynevcsachgmkfvpirtladdggpqldptfvrey
aagldtiidkdsgeerdrketdmfptrvgdgmgpdlsvmakarggpeyiynyvigfeenp
ecapegidgyyynktfqiggvpdtckdaagvkithgswarmppplvddqvtyedgtpatv
dqmaqdvsaflmwaaepklvarkqmglvamvmlgllsvmlyltnkrlwapykghk

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6xkvR (R:)
mshaednagtrrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevg
tqltvkwrgkpvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdg
tntgewlvmlgvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipva
afvdettiklg

    Sequence, based on observed residues (ATOM records):
    >6xkvR (R:)
rrdflyhataatgvvvtgaavwplinqmnasadvkamasifvdvsavevgtqltvkwrgk
pvfirrrdekdielarsvplgalrdtsaenankpgaeatdenrtlpafdgtntgewlvml
gvcthlgcvpmgdksgdfggwfcpchgshydsagrirkgpaprnldipvaafvdettikl
g