PDB entry 6xk2

View 6xk2 on RCSB PDB site
Description: Crystal structure of Ribokinase from Cryptococcus neoformans var. grubii serotype A in complex with ADP
Class: transferase
Keywords: SSGCID, Cryptococcus neoformans, Ribokinase, phosphorylation, ATP, ADP, D-ribose, D-ribose 5-phosphate, structural genomics, Seattle Structural Genomics Center for Infectious Disease, TRANSFERASE
Deposited on 2020-06-25, released 2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-15, with a file datestamp of 2020-07-10.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ribokinase
    Species: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) [TaxId:235443]
    Gene: CNAG_02296
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6xk2a_
  • Chain 'B':
    Compound: ribokinase
    Species: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) [TaxId:235443]
    Gene: CNAG_02296
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6xk2b_
  • Chain 'C':
    Compound: ribokinase
    Species: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) [TaxId:235443]
    Gene: CNAG_02296
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6xk2c_
  • Chain 'D':
    Compound: ribokinase
    Species: Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) [TaxId:235443]
    Gene: CNAG_02296
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6xk2d_
  • Heterogens: ADP, EDO, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6xk2A (A:)
mahhhhhhmstssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafava
raggqveldgaigddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlha
ganyylpsptpttslatythllvqnevplsstlayltaagqssppltsvfnpspmltpaq
lrefpwkhlswlivnegelgdlllafgssanpgeakedelqakasagilelhendyfskn
vgiictlgakgilcyepgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqda
lktclvacgicvenegamesvptlnavkerla

    Sequence, based on observed residues (ATOM records): (download) 
    >6xk2A (A:)
stssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafavaraggqveld
gaigddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlhaganyylpsp
ttslatythllvqnevplsstlayltaagqssppltsvfnpspmltpaqlrefpwkhlsw
livnegelgdlllafgssanpgeakedelqakasagilelhendyfsknvgiictlgakg
ilcyepgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqdalktclvacgic
venegamesvptlnavkerl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6xk2B (B:)
mahhhhhhmstssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafava
raggqveldgaigddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlha
ganyylpsptpttslatythllvqnevplsstlayltaagqssppltsvfnpspmltpaq
lrefpwkhlswlivnegelgdlllafgssanpgeakedelqakasagilelhendyfskn
vgiictlgakgilcyepgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqda
lktclvacgicvenegamesvptlnavkerla

    Sequence, based on observed residues (ATOM records): (download) 
    >6xk2B (B:)
ssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafavaraggqveldga
igddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlhaganyylpsptp
ttslatythllvqnevplsstlayltaagqssppltsvfnpspmltpaqlrefpwkhlsw
livnegelgdlllafgssanpgeakedelqakasagilelhendyfsknvgiictlgakg
ilcyepgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqdalktclvacgic
venegamesvptlnavkerl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6xk2C (C:)
mahhhhhhmstssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafava
raggqveldgaigddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlha
ganyylpsptpttslatythllvqnevplsstlayltaagqssppltsvfnpspmltpaq
lrefpwkhlswlivnegelgdlllafgssanpgeakedelqakasagilelhendyfskn
vgiictlgakgilcyepgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqda
lktclvacgicvenegamesvptlnavkerla

    Sequence, based on observed residues (ATOM records): (download) 
    >6xk2C (C:)
ssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafavaraggqveldga
igddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlhaganyylpsptt
slatythllvqnevplsstlayltaagqssppltsvfnpspmltpaqlrefpwkhlswli
vnegelgdlllafgskedelqakasagilelhendyfsknvgiictlgakgilcyepgke
vgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqdalktclvacgicvenegames
vptlnavkerl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6xk2D (D:)
mahhhhhhmstssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafava
raggqveldgaigddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlha
ganyylpsptpttslatythllvqnevplsstlayltaagqssppltsvfnpspmltpaq
lrefpwkhlswlivnegelgdlllafgssanpgeakedelqakasagilelhendyfskn
vgiictlgakgilcyepgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqda
lktclvacgicvenegamesvptlnavkerla

    Sequence, based on observed residues (ATOM records): (download) 
    >6xk2D (D:)
ssrclvrgsvnideffhlphivrpgetisstgltkraggkganqafavaraggqveldga
igddgiwvkemlesagvgtdklkivkdevtgraviqsaadgensivlhaganyylptsla
tythllvqnevplsstlayltaagqssppltsvfnpspmltpaqlrefpwkhlswlivne
gelgdlllafgssanpgeakedelqakasagilelhendyfsknvgiictlgakgilcye
pgkevgylpaaklqnpvkdttgagdcfagyfvaglmsgkslqdalktclvacgicveneg
amesvptlnavkerl