SCOPe 2.08: Structural Classification of Proteins

PDB entry 6xi2

View 6xi2 on RCSB PDB site
Description: apo form of pomgnt2
Deposited on 2020-06-19, released 2021-04-21
The last revision was dated 2021-04-21, with a file datestamp of 2021-04-16.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Species: Homo sapiens [TaxId:9606]
Gene: POMGNT2, AGO61, C3orf39, EOGTL, GTDC2
Database cross-references and differences (RAF-indexed):
- Uniprot Q8NAT1 (0-532)
  - conflict (7)
  - conflict (78)
  - conflict (231)
  - conflict (379)
  - conflict (429-430)
  - conflict (470)
  - conflict (481)
  - conflict (484-485)
Chain 'B':
Compound: Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Species: Homo sapiens [TaxId:9606]
Gene: POMGNT2, AGO61, C3orf39, EOGTL, GTDC2
Database cross-references and differences (RAF-indexed):
- Uniprot Q8NAT1 (0-527)
  - conflict (3)
  - conflict (74)
  - conflict (225)
  - conflict (233)
  - conflict (369)
  - conflict (372)
  - conflict (414-415)
  - conflict (423-425)
  - conflict (465)
  - conflict (479-480)
Chain 'C':
Compound: Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Species: Homo sapiens [TaxId:9606]
Gene: POMGNT2, AGO61, C3orf39, EOGTL, GTDC2
Database cross-references and differences (RAF-indexed):
- Uniprot Q8NAT1 (0-527)
  - conflict (3)
  - conflict (225)
  - conflict (233-234)
  - conflict (367)
  - conflict (372)
  - conflict (416-417)
  - conflict (422-425)
  - conflict (465)
  - conflict (476)
  - conflict (479-480)
Chain 'D':
Compound: Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Species: Homo sapiens [TaxId:9606]
Gene: POMGNT2, AGO61, C3orf39, EOGTL, GTDC2
Database cross-references and differences (RAF-indexed):
- Uniprot Q8NAT1 (0-532)
  - conflict (7)
  - conflict (229)
  - conflict (237-238)
  - conflict (245)
  - conflict (260)
  - conflict (379)
  - conflict (418)
  - conflict (420)
  - conflict (430)
  - conflict (470)
  - conflict (481)
Chain 'G':
Compound: ala-ala-ala-ala-ala-ala-ala-ala-ala-ala
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6XI2 (0-9)
Chain 'H':
Compound: ala-gly-ala-gly-ala-ala-ala-ala-ala-ala
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- PDB 6XI2 (0-9)
Heterogens: NAG, PO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6xi2A (A:)
alridypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnl
gsrrfqpalldlstvedhatqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhv
fhddllplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrll
cfshafvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnvsatgvplgee
yilvfsrtqnrlilneaelllalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhga
qlvttlflprgatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthper
pwdqggithldraeqarilasrevprhlccrnpewlfriyqdtkvdipsliqtirrvvkg
rpgprkqkwaaglypgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlq
eageaayvpyilalqnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Sequence, based on observed residues (ATOM records):

>6xi2A (A:)
alridypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnl
gsrrfqpalldlstvedhatqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhv
fhddllplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrll
cfshafvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnvsatgvplgee
yilvfsrtqnrlilneaelllalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhga
qlvttlflprgatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthper
pwdqggithldraeqarilasrevprhlccrnpewlfriyqdtkvdipsliqtirrvvkg
rpgpaaglypgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlqeagea
ayvpyilalqnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Chain 'B':
Sequence, based on SEQRES records:

>6xi2B (B:)
dypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnlgsrr
fqpalldlstvedhatqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhvfhdd
llplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrllcfsh
afvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnashtgvplaeeyilv
fsrtqnrlilneaelllalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhgaqlvt
tlflprgatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthperpwdq
ggithldraqqaailqsrevprhlccrnpewlfriyqdtkvdipsliqtirrvvaapgpa
kqkaaaglypgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlqeqgea
ayvpyilalqnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Sequence, based on observed residues (ATOM records):

>6xi2B (B:)
dypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnlgsrr
fqpalldlstvedhatqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhvfhdd
llplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrllcfsh
afvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnasaeeyilvfsrtqn
rlilneaelllalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhgaqlvttlflpr
gatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthperpwdqggithl
draqqaailqsrevprhlccrnpewlfriyqdtkvdipsliqtirrvvaapgpaaaglyp
gkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlqeqgeaayvpyilalq
nhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Chain 'C':
Sequence, based on SEQRES records:

>6xi2C (C:)
dypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnlgsrr
fqpalldlstvedhntqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhvfhdd
llplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrllcfsh
afvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnashtgvplaaeyilv
fsrtqnrlilneaelllalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhgaqlvt
tlflprgatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthperpwdq
ggithldaaeqaailqsrevprhlccrnpewlfriyqdtkvdipsliqtirrvvkgaapr
kqaaaaglypgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlqeagea
ayvpyilalqnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Sequence, based on observed residues (ATOM records):

>6xi2C (C:)
dypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnlgsrr
fqpalldlstvedhntqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhvfhdd
llplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrllcfsh
afvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnasaaeyilvfsrtqn
rlilneaelllalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhgaqlvttlflpr
gatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthperpwdqggithl
daaeqaailqsrevprhlccrnpewlfriyqdtkvdipsliqtirrvvkgaapaaaagly
pgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlqeageaayvpyilal
qnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Chain 'D':
Sequence, based on SEQRES records:

>6xi2D (D:)
alridypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnl
gsrrfqpalldlstvedhntqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhv
fhddllplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrll
cfshafvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnashtgvplaae
yilvfartqnrlilneaellaalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhga
qlvttlflprgatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthper
pwdqggithldraeqarilssrevprhlccrnpewlfriyqdtkvdipsliqtirrvvag
apgprkqkwtaglypgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlq
eagentyvpyilalqnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Sequence, based on observed residues (ATOM records):

>6xi2D (D:)
alridypaalqilmeggthmvctgrthtdricrfkwlcysneaeefiffhgntsvmlpnl
gsrrfqpalldlstvedhntqyfnfvelpaaalrfmpkpvfvpdvalianrfnpdnlmhv
fhddllplfytlrqfpglahearlffmegwgegahfdlykllspkqpllraqlktlgrll
cfshafvglskittwyqygfvqpqgpkanilvsgneirqfarfmteklnasaaeyilvfa
rtqnrlilneaellaalaqefqmktvtvsledhtfadvvrlvsnasmlvsmhgaqlvttl
flprgatvvelfpyavnpdhytpyktlamlpgmdlqyvawrnmmpentvthperpwdqgg
ithldraeqarilssrevprhlccrnpewlfriyqdtkvdipsliqtirrvvagapgpag
lypgkvrearcqasvhgasearltvswqipwnlkylkvaevkyevwlqeagentyvpyil
alqnhtftenikpfttylvwvrcifnkillgpfadvlvcnt

Chain 'G':
Sequence; same for both SEQRES and ATOM records:
```
>6xi2G (G:)
aaaaaaaaaa
```
Chain 'H':
Sequence; same for both SEQRES and ATOM records:
```
>6xi2H (H:)
agagaaaaaa
```