PDB entry 6xfa

View 6xfa on RCSB PDB site
Description: cryo-em structure of ebv bflf1
Deposited on 2020-06-15, released 2021-02-24
The last revision was dated 2021-02-24, with a file datestamp of 2021-02-19.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Packaging protein UL32
    Species: Epstein-Barr virus (strain GD1) [TaxId:10376]
    Gene: BFLF1
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xfaA (A:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaA (A:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xfaB (B:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaB (B:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xfaC (C:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaC (C:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xfaD (D:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaD (D:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6xfaE (E:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaE (E:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6xfaF (F:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaF (F:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6xfaG (G:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaG (G:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6xfaH (H:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaH (H:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6xfaI (I:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaI (I:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6xfaJ (J:)
medfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdll
dtlvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfm
psrilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwp
rttptfltlpgprtckdsqdvpgdvgrglytalcchlptrnrvqhpflraekgglspeit
tkadycglllgtwqgtdllggpghhaiglnaeysgdelaelalaitrpeagdhsqgpcll
apmfglrhknasrticplceslgahpdakdtldrfkslildsfgnnikildrivfliktq
ntlldvpcprlrawlqmctpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaa
laagqnleqgvcdslitlvyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqts
qvyv

    Sequence, based on observed residues (ATOM records):
    >6xfaJ (J:)
dfvpwtvdnlksqfeavgllmahsylpanaeegiaypplvhtyeslspastcrvcdlldt
lvnhsdapvaffedyallcyyclnaprawisslitgmdflhilikyfpmaggldslfmps
rilaidiqlhfyicrcflpvsssdmirnanlgyykleflksiltgqspanfcfksmwtka
dycglllgtwqgtdllggpgaelalaitrpeagdhsqgpcllapmfglrhknasrticpl
ceslgahpdakdtldrfkslildsfgnnikildrivfliktqntlldvpcprlrawlqmc
tpqdfhkhlfcdplcainhsitnpsvlfgqiyppsfqafkaalaagqnleqgvcdslitl
vyifkstqvarvgktilvdvtkeldvvlrihgldlvqsyqtsqvyv