PDB entry 6xeq

View 6xeq on RCSB PDB site
Description: crystal structure of the tetrameric 6-phosphogluconate dehydrogenase from gluconobacter oxidans
Deposited on 2020-06-13, released 2020-12-02
The last revision was dated 2021-06-23, with a file datestamp of 2021-06-18.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 6-phosphogluconate dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: GOX1705
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5EBD7 (21-End)
      • expression tag (17-20)
  • Chain 'B':
    Compound: 6-phosphogluconate dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: GOX1705
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5EBD7 (21-End)
      • expression tag (18-20)
  • Chain 'C':
    Compound: 6-phosphogluconate dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: GOX1705
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5EBD7 (21-End)
      • expression tag (16-20)
  • Chain 'D':
    Compound: 6-phosphogluconate dehydrogenase
    Species: Gluconobacter oxydans [TaxId:442]
    Gene: GOX1705
    Database cross-references and differences (RAF-indexed):
    • Uniprot G5EBD7 (21-End)
      • expression tag (18-20)
  • Heterogens: SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xeqA (A:)
mgsshhhhhhssgenlyfqghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsv
vgrceagratpadtladmakllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidg
gntyykddvrrsaelaekgisyvdvgtsggvwglergycmmfggtketaeyidpilsala
pgigdvprtpgrdeaghdpraeqgylhcgpagsghfvkmvhngieygmmqafaegfdimk
sknspilaekdrfelnmgdiaevwrrgsvvsswlldltaealtrsetlnefsgevadsge
grwtieaaieedvpapvmtaalftrfrsrsgnnfaekilsaqrfgfgghvekk

    Sequence, based on observed residues (ATOM records):
    >6xeqA (A:)
fqghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsvvgrceagratpadtlad
makllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidggntyykddvrrsaelae
kgisyvdvgtsggvwglergycmmfggtketaeyidpilsalapgigdvprtpgrdeagh
dpraeqgylhcgpagsghfvkmvhngieygmmqafaegfdimksknspilaekdrfelnm
gdiaevwrrgsvvsswlldltaealtrsesgegrwtieaaieedvpapvmtaalftrfrs
rsgnnfaekilsaqrfgfgg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xeqB (B:)
mgsshhhhhhssgenlyfqghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsv
vgrceagratpadtladmakllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidg
gntyykddvrrsaelaekgisyvdvgtsggvwglergycmmfggtketaeyidpilsala
pgigdvprtpgrdeaghdpraeqgylhcgpagsghfvkmvhngieygmmqafaegfdimk
sknspilaekdrfelnmgdiaevwrrgsvvsswlldltaealtrsetlnefsgevadsge
grwtieaaieedvpapvmtaalftrfrsrsgnnfaekilsaqrfgfgghvekk

    Sequence, based on observed residues (ATOM records):
    >6xeqB (B:)
qghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsvvgrceagratpadtladm
akllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidggntyykddvrrsaelaek
gisyvdvgtsggvwglergycmmfggtketaeyidpilsalapgigdvprtpgrdeaghd
praeqgylhcgpagsghfvkmvhngieygmmqafaegfdimksknspilaekdrfelnmg
diaevwrrgsvvsswlldltaealtrsdsgegrwtieaaieedvpapvmtaalftrfrsr
sgnnfaekilsaqrfgfg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6xeqC (C:)
mgsshhhhhhssgenlyfqghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsv
vgrceagratpadtladmakllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidg
gntyykddvrrsaelaekgisyvdvgtsggvwglergycmmfggtketaeyidpilsala
pgigdvprtpgrdeaghdpraeqgylhcgpagsghfvkmvhngieygmmqafaegfdimk
sknspilaekdrfelnmgdiaevwrrgsvvsswlldltaealtrsetlnefsgevadsge
grwtieaaieedvpapvmtaalftrfrsrsgnnfaekilsaqrfgfgghvekk

    Sequence, based on observed residues (ATOM records):
    >6xeqC (C:)
yfqghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsvvgrceagratpadtla
dmakllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidggntyykddvrrsaela
ekgisyvdvgtsggvwglergycmmfggtketaeyidpilsalapgigdvprtpgrdeag
hdpraeqgylhcgpagsghfvkmvhngieygmmqafaegfdimksknspilaekdrfeln
mgdiaevwrrgsvvsswlldltaealtrsgegrwtieaaieedvpapvmtaalftrfrsr
sgnnfaekilsaqrfgfg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6xeqD (D:)
mgsshhhhhhssgenlyfqghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsv
vgrceagratpadtladmakllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidg
gntyykddvrrsaelaekgisyvdvgtsggvwglergycmmfggtketaeyidpilsala
pgigdvprtpgrdeaghdpraeqgylhcgpagsghfvkmvhngieygmmqafaegfdimk
sknspilaekdrfelnmgdiaevwrrgsvvsswlldltaealtrsetlnefsgevadsge
grwtieaaieedvpapvmtaalftrfrsrsgnnfaekilsaqrfgfgghvekk

    Sequence, based on observed residues (ATOM records):
    >6xeqD (D:)
qghmrigiiglgrmggniavrltrhghdvvvhdrtsevttsvvgrceagratpadtladm
akllegdehrvvwvmlpagaitedcvqqlggllgrgdiiidggntyykddvrrsaelaek
gisyvdvgtsggvwglergycmmfggtketaeyidpilsalapgigdvprtpgrdeaghd
praeqgylhcgpagsghfvkmvhngieygmmqafaegfdimksknspilaekdrfelnmg
diaevwrrgsvvsswlldltaealtrssgegrwtieaaieedvpapvmtaalftrfrsrs
gnnfaekilsaqrfg