PDB entry 6xci

View 6xci on RCSB PDB site
Description: structure of ndm-1 in complex with macrocycle inhibitor ndm1i-3d
Deposited on 2020-06-08, released 2021-03-31
The last revision was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.53 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: BlaNDM-4_1_JQ348841
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: NDM-1, bla NDM-1, blaNDM-1, blaNDM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: BlaNDM-4_1_JQ348841
    Species: Klebsiella pneumoniae [TaxId:573]
    Gene: NDM-1, bla NDM-1, blaNDM-1, blaNDM1
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Macrocycle NDM1i-3D
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: LWI, DCY, DLY, DPR, HYP, NLE, ACT, ZN, CD, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6xciA (A:)
gshmmpgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrd
ggrvlvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyan
alsnqlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtd
iafggclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaitht
armadklr

    Sequence, based on observed residues (ATOM records):
    >6xciA (A:)
gdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqi
lnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhsl
tfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnl
gdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadkl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6xciB (B:)
gshmmpgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrd
ggrvlvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyan
alsnqlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtd
iafggclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaitht
armadklr

    Sequence, based on observed residues (ATOM records):
    >6xciB (B:)
gdqrfgdlvfrqlapnvwqhtsyldgavasnglivrdggrvlvvdtawtddqtaqilnwi
kqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhsltfaa
ngwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlgdad
tehyaasarafgaafpkasmivmshsapdsraaithtarmadkl

  • Chain 'H':
    No sequence available.