PDB entry 6x9d

View 6x9d on RCSB PDB site
Description: structure of proline utilization a with trans-4-hydroxy-l-proline bound in the l-glutamate-gamma-semialdehyde dehydrogenase active site
Deposited on 2020-06-02, released 2020-12-30
The last revision was dated 2021-01-06, with a file datestamp of 2021-01-01.
Experiment type: XRAY
Resolution: 1.54 Å
R-factor: N/A
AEROSPACI score: 0.55 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Bifunctional protein putA
    Species: Sinorhizobium meliloti (strain SM11) [TaxId:707241]
    Gene: putA, SM11_chr0102
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Bifunctional protein putA
    Species: Sinorhizobium meliloti (strain SM11) [TaxId:707241]
    Gene: putA, SM11_chr0102
    Database cross-references and differences (RAF-indexed):
  • Heterogens: FAD, HYP, PGE, FMT, NAD, SO4, MG, PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6x9dA (A:)
smmspnplqkpaidaapapfadfappvrpqstlrraitaayrrpeteclpplveaatqsk
eirdaaastarkliealrgkhsgsgveglvqeyslssqegvalmclaeallripdtatrd
alirdkiadgnwkshlggsrslfvnaatwglvvtgkltstvndrslaaaltrlisrcgep
virrgvdmamrmmgeqfvtgetirealkrskeleekgfsysydmlgeaattaadaeryyr
dyesaihaigkasagrgiyegpgisiklsalhprysraqaarvmgellprvkalallakn
ydiglnidaeeadrlelsldllevlcldgdlsgwngmgfvvqaygkrcpfvldfiidlar
rsgrrimvrlvkgaywdaeikraqldgladfpvftrkihtdvsyiacaakllaatdvvfp
qfathnaqtlaaiyhmagkdfhvgkyefqclhgmgeplyeevvgrgkldrpcriyapvgt
hetllaylvrrllenganssfvhrindpkvsideliadpvevvrampvvgakhdrialpa
elfgdartnsagldlsneetlasltealresaamkwtalpqlatgpaagetrtvlnpgdh
rdvvgsvtetseedarravrlaadaapdwaavppseraacldraaelmqarmptllglii
reagksalnaiaevreaidflryyaeqtrrtlgpghgplgpivcispwnfplaiftgqia
aalvagnpvlakpaeetpliaaegvrilreagipasalqllpgdgrvgaalvaaaetagv
mftgstevarliqaqladrlspagrpipliaetggqnamivdssalaeqvvgdvitsafd
sagqrcsalrvlclqedvadriltmlkgalhelhigrtdrlsvdvgpvitseakdniekh
iermrglgrkveqiglasetgvgtfvpptiieleklsdlqrevfgpvlhviryrrddldr
lvddvnatgygltfglhtrldetiahvtsrikagnlyinrniigavvgvqpfggrglsgt
gpkaggplylgrlvttapvppqhssvhtdpvlldfakwldgkgaraeaeaarnagsssal
gldlelpgpvgernlytlhargrillvpatesglyhqlaaalatgnsvaidaasglqasl
knlpqtvglrvswskdwaadgpfagalvegdaeriravnkaiaalpgplllvqaassgei
arnpdayclnwlveevsasintaaaggnaslmaig

    Sequence, based on observed residues (ATOM records):
    >6x9dA (A:)
apapfadfappvrpqstlrraitaayrrpeteclpplveaatqskeirdaaastarklie
alrgkhsgsgveglvqeyslssqegvalmclaeallripdtatrdalirdkiadgnwksh
lsrslfvnaatwglvvtgkltstvndrslaaaltrlisrcgepvirrgvdmamrmmgeqf
vtgetirealkrskeleekgfsysydmlgeaattaadaeryyrdyesaihaigkasagrg
iyegpgisiklsalhprysraqaarvmgellprvkalallaknydiglnidaeeadrlel
sldllevlcldgdlsgwngmgfvvqaygkrcpfvldfiidlarrsgrrimvrlvkgaywd
aeikraqldgladfpvftrkihtdvsyiacaakllaatdvvfpqfathnaqtlaaiyhma
gkdfhvgkyefqclhgmgeplyeevvgrgkldrpcriyapvgthetllaylvrrllenga
nssfvhrindpkvsideliadpvevvrampvvgakhdrialpaelfgdartnsagldlsn
eetlasltealresaamkwtalpqlatgpaagetrtvlnpgdhrdvvgsvtetseedarr
avrlaadaapdwaavppseraacldraaelmqarmptllgliireagksalnaiaevrea
idflryyaeqtrrtlgpghgplgpivcispwnfplaiftgqiaaalvagnpvlakpaeet
pliaaegvrilreagipasalqllpgdgrvgaalvaaaetagvmftgstevarliqaqla
drlspagrpipliaetggqnamivdssalaeqvvgdvitsafdsagqrcsalrvlclqed
vadriltmlkgalhelhigrtdrlsvdvgpvitseakdniekhiermrglgrkveqigla
setgvgtfvpptiieleklsdlqrevfgpvlhviryrrddldrlvddvnatgygltfglh
trldetiahvtsrikagnlyinrniigavvgvqpfggrglsgtgpkaggplylgrlvtta
pvppqhssvhtdpvlldfakwldgkgaraeaeaarnagsssalgldlelpgpvgernlyt
lhargrillvpatesglyhqlaaalatgnsvaidaasglqaslknlpqtvglrvswskdw
aadgpfagalvegdaeriravnkaiaalpgplllvqaassgeiarnpdayclnwlveevs
asintaaaggnaslmaig

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6x9dB (B:)
smmspnplqkpaidaapapfadfappvrpqstlrraitaayrrpeteclpplveaatqsk
eirdaaastarkliealrgkhsgsgveglvqeyslssqegvalmclaeallripdtatrd
alirdkiadgnwkshlggsrslfvnaatwglvvtgkltstvndrslaaaltrlisrcgep
virrgvdmamrmmgeqfvtgetirealkrskeleekgfsysydmlgeaattaadaeryyr
dyesaihaigkasagrgiyegpgisiklsalhprysraqaarvmgellprvkalallakn
ydiglnidaeeadrlelsldllevlcldgdlsgwngmgfvvqaygkrcpfvldfiidlar
rsgrrimvrlvkgaywdaeikraqldgladfpvftrkihtdvsyiacaakllaatdvvfp
qfathnaqtlaaiyhmagkdfhvgkyefqclhgmgeplyeevvgrgkldrpcriyapvgt
hetllaylvrrllenganssfvhrindpkvsideliadpvevvrampvvgakhdrialpa
elfgdartnsagldlsneetlasltealresaamkwtalpqlatgpaagetrtvlnpgdh
rdvvgsvtetseedarravrlaadaapdwaavppseraacldraaelmqarmptllglii
reagksalnaiaevreaidflryyaeqtrrtlgpghgplgpivcispwnfplaiftgqia
aalvagnpvlakpaeetpliaaegvrilreagipasalqllpgdgrvgaalvaaaetagv
mftgstevarliqaqladrlspagrpipliaetggqnamivdssalaeqvvgdvitsafd
sagqrcsalrvlclqedvadriltmlkgalhelhigrtdrlsvdvgpvitseakdniekh
iermrglgrkveqiglasetgvgtfvpptiieleklsdlqrevfgpvlhviryrrddldr
lvddvnatgygltfglhtrldetiahvtsrikagnlyinrniigavvgvqpfggrglsgt
gpkaggplylgrlvttapvppqhssvhtdpvlldfakwldgkgaraeaeaarnagsssal
gldlelpgpvgernlytlhargrillvpatesglyhqlaaalatgnsvaidaasglqasl
knlpqtvglrvswskdwaadgpfagalvegdaeriravnkaiaalpgplllvqaassgei
arnpdayclnwlveevsasintaaaggnaslmaig

    Sequence, based on observed residues (ATOM records):
    >6x9dB (B:)
apapfadfappvrpqstlrraitaayrrpeteclpplveaatqskeirdaaastarklie
alrgkhsgsgveglvqeyslssqegvalmclaeallripdtatrdalirdkiadgnwksh
lrslfvnaatwglvvtgkltstvndrslaaaltrlisrcgepvirrgvdmamrmmgeqfv
tgetirealkrskeleekgfsysydmlgeaattaadaeryyrdyesaihaigkasagrgi
yegpgisiklsalhprysraqaarvmgellprvkalallaknydiglnidaeeadrlels
ldllevlcldgdlsgwngmgfvvqaygkrcpfvldfiidlarrsgrrimvrlvkgaywda
eikraqldgladfpvftrkihtdvsyiacaakllaatdvvfpqfathnaqtlaaiyhmag
kdfhvgkyefqclhgmgeplyeevvgrgkldrpcriyapvgthetllaylvrrllengan
ssfvhrindpkvsideliadpvevvrampvvgakhdrialpaelfgdartnsagldlsne
etlasltealresaamkwtalpqlatgpaagetrtvlnpgdhrdvvgsvtetseedarra
vrlaadaapdwaavppseraacldraaelmqarmptllgliireagksalnaiaevreai
dflryyaeqtrrtlgpghgplgpivcispwnfplaiftgqiaaalvagnpvlakpaeetp
liaaegvrilreagipasalqllpgdgrvgaalvaaaetagvmftgstevarliqaqlad
rlspagrpipliaetggqnamivdssalaeqvvgdvitsafdsagqrcsalrvlclqedv
adriltmlkgalhelhigrtdrlsvdvgpvitseakdniekhiermrglgrkveqiglas
etgvgtfvpptiieleklsdlqrevfgpvlhviryrrddldrlvddvnatgygltfglht
rldetiahvtsrikagnlyinrniigavvgvqpfggrglsgtgpkaggplylgrlvttap
vppqhssvhtdpvlldfakwldgkgaraeaeaarnagsssalgldlelpgpvgernlytl
hargrillvpatesglyhqlaaalatgnsvaidaasglqaslknlpqtvglrvswskdwa
adgpfagalvegdaeriravnkaiaalpgplllvqaassgeiarnpdayclnwlveevsa
sintaaaggnaslmaig