PDB entry 6x8s

View 6x8s on RCSB PDB site
Description: crystal structure of 3d11 fab in complex with plasmodium berghei circumsporozoite protein nand peptide
Deposited on 2020-06-01, released 2020-12-02
The last revision was dated 2020-12-16, with a file datestamp of 2020-12-11.
Experiment type: XRAY
Resolution: 1.55 Å
R-factor: N/A
AEROSPACI score: 0.54 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: 3D11 Fab heavy chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6X8S (Start-214)
  • Chain 'L':
    Compound: 3D11 Fab light chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6X8S (0-218)
  • Chain 'P':
    Compound: NAND peptide
    Species: Plasmodium berghei ANKA, synthetic [TaxId:5823]
    Database cross-references and differences (RAF-indexed):
    • PDB 6X8S (0-End)
  • Heterogens: EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6x8sH (H:)
qaylqqsgaelvrsgasvkmsckasgytftsynmhwvkqtpgqglewigyiypgngvtnf
nqkfkgkatltadtssstaymqissltsedsavyfcasaaywgqgtlvtvssastkgpsv
fplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
vtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records):
    >6x8sH (H:)
ylqqsgaelvrsgasvkmsckasgytftsynmhwvkqtpgqglewigyiypgngvtnfnq
kfkgkatltadtssstaymqissltsedsavyfcasaaywgqgtlvtvssastkgpsvfp
lapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssvvt
vpssslgtqtyicnvnhkpsntkvdkkvepksc

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6x8sL (L:)
dvvmtqtpltlsvtigqpasisckssqsllysdgktylnwllqrpgqspkrlislvseld
sgvpdrftgsgsgtdftlkisrveaedlgvyycwqgthfprtfgggtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6x8sP (P:)
ppppnandppppnand

    Sequence, based on observed residues (ATOM records):
    >6x8sP (P:)
ppppnandppppn