SCOPe 2.08: Structural Classification of Proteins

PDB entry 6x6v

View 6x6v on RCSB PDB site
Description: Crystal structure of inactive enzymatic binary toxin component from Clostridium difficile in complex with NADPH
Class: toxin, transferase
Keywords: ribosyltransferase, cdta, toxin, transferase
Deposited on 2020-05-29, released 2021-07-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-28, with a file datestamp of 2021-07-23.
Experiment type: XRAY
Resolution: 2.42 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: CdtA
Species: Clostridioides difficile [TaxId:1496]
Gene: cdtA
Database cross-references and differences (RAF-indexed):
- Uniprot F5B5W8 (3-420)
  - initiating methionine (0)
  - expression tag (1-2)
  - conflict (345)
  - conflict (385)
  - conflict (387)
  - expression tag (421-428)
Domains in SCOPe 2.08: d6x6va1, d6x6va2
Chain 'B':
Compound: CdtA
Species: Clostridioides difficile [TaxId:1496]
Gene: cdtA
Database cross-references and differences (RAF-indexed):
- Uniprot F5B5W8 (3-420)
  - initiating methionine (0)
  - expression tag (1-2)
  - conflict (345)
  - conflict (385)
  - conflict (387)
  - expression tag (421-428)
Domains in SCOPe 2.08: d6x6vb1, d6x6vb2
Chain 'C':
Compound: CdtA
Species: Clostridioides difficile [TaxId:1496]
Gene: cdtA
Database cross-references and differences (RAF-indexed):
- Uniprot F5B5W8 (3-420)
  - initiating methionine (0)
  - expression tag (1-2)
  - conflict (345)
  - conflict (385)
  - conflict (387)
  - expression tag (421-428)
Domains in SCOPe 2.08: d6x6vc1, d6x6vc2
Chain 'D':
Compound: CdtA
Species: Clostridioides difficile [TaxId:1496]
Gene: cdtA
Database cross-references and differences (RAF-indexed):
- Uniprot F5B5W8 (3-420)
  - initiating methionine (0)
  - expression tag (1-2)
  - conflict (345)
  - conflict (385)
  - conflict (387)
  - expression tag (421-428)
Domains in SCOPe 2.08: d6x6vd1, d6x6vd2
Heterogens: NDP, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>6x6vA (A:)
mvanttykapierpedflkdkekakewerkeaerieqklersekealesykkdsveisky
sqtrnyfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqn
eislekfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytnt
nnvstlieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndws
nkltpneladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnlt
vyrrsgpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakr
kivlritipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatli
plehhhhhh

Sequence, based on observed residues (ATOM records): (download)

>6x6vA (A:)
tykapierpedflkdkekakewerkeaerieqklersekealesykkdsveiskysqtrn
yfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqneisle
kfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytntnnvst
lieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndwsnkltp
neladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnltvyrrs
gpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakrkivlr
itipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatlip

Chain 'B':
Sequence, based on SEQRES records: (download)

>6x6vB (B:)
mvanttykapierpedflkdkekakewerkeaerieqklersekealesykkdsveisky
sqtrnyfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqn
eislekfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytnt
nnvstlieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndws
nkltpneladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnlt
vyrrsgpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakr
kivlritipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatli
plehhhhhh

Sequence, based on observed residues (ATOM records): (download)

>6x6vB (B:)
tykapierpedflkdkekakewerkeaerieqklersekealesykkdsveiskysqtrn
yfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqneisle
kfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytntnnvst
lieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndwsnkltp
neladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnltvyrrs
gpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakrkivlr
itipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatlip

Chain 'C':
Sequence, based on SEQRES records: (download)

>6x6vC (C:)
mvanttykapierpedflkdkekakewerkeaerieqklersekealesykkdsveisky
sqtrnyfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqn
eislekfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytnt
nnvstlieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndws
nkltpneladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnlt
vyrrsgpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakr
kivlritipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatli
plehhhhhh

Sequence, based on observed residues (ATOM records): (download)

>6x6vC (C:)
tykapierpedflkdkekakewerkeaerieqklersekealesykkdsveiskysqtrn
yfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqneisle
kfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytntnnvst
lieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndwsnkltp
neladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnltvyrrs
gpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakrkivlr
itipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatlip

Chain 'D':
Sequence, based on SEQRES records: (download)

>6x6vD (D:)
mvanttykapierpedflkdkekakewerkeaerieqklersekealesykkdsveisky
sqtrnyfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqn
eislekfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytnt
nnvstlieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndws
nkltpneladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnlt
vyrrsgpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakr
kivlritipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatli
plehhhhhh

Sequence, based on observed residues (ATOM records): (download)

>6x6vD (D:)
tykapierpedflkdkekakewerkeaerieqklersekealesykkdsveiskysqtrn
yfydyqieansrekeykelrnaisknkidkpmyvyyfespekfafnkvirtenqneisle
kfnefketiqnklfkqdgfkdislyepgkgdekptpllmhlklprntgmlpytntnnvst
lieqgysikidkivrividgkhyikaeasvvssldfkddvskgdswgkanyndwsnkltp
neladvndymrggytainnylisngpvnnpnpeldskitnienalkrepiptnltvyrrs
gpqefgltltspeydfnklenidafkskwegqalsypnfiftsigsvnmsafakrkivlr
itipkgspgaylsaipgyagqyqvllnhgskfkinkidsykdgtitklivdatlip