PDB entry 6x6p

View 6x6p on RCSB PDB site
Description: characterization of the sars-cov-2 s protein: biophysical, biochemical, structural, and antigenic analysis
Deposited on 2020-05-28, released 2020-06-10
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: EM
Resolution: 3.22 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (971-972)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (971-972)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (971-972)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6x6pA (A:)
cvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtn
gtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefq
fcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvf
knidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgds
ssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyq
tsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasf
stfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvi
awnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqs
ygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvlte
snkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqd
vnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasy
qtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkt
svdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppi
kdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqk
fngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqn
vlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgais
svlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvl
gqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregv
fvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldk
yfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyip
eaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsggg
gsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6x6pA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaidnpvlpfndgvyfastek
sniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannc
tfeyvsknlrefvfknidgyfkiyskhtpinlpqgfsaleplvdlpiginitrfqtllal
haayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq
ptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcyg
vsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnl
dskvggnynylyrlfrksnlkpferdisteiyqagncyfplqsygfqptngvgyqpyrvv
vlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiad
ttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltp
twrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaen
svaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctql
nraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllf
nkvtfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngig
vtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnf
gaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkms
ecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfp
regvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6x6pB (B:)
cvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtn
gtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefq
fcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvf
knidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgds
ssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyq
tsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasf
stfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvi
awnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqs
ygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvlte
snkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqd
vnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasy
qtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkt
svdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppi
kdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqk
fngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqn
vlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgais
svlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvl
gqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregv
fvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldk
yfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyip
eaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsggg
gsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6x6pB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaidnpvlpfndgvyfastek
sniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannc
tfeyvsknlrefvfknidgyfkiyskhtpinlpqgfsaleplvdlpiginitrfqtllal
haayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq
ptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcyg
vsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnl
dskvggnynylyrlfrksnlkpferdisteiyqagncyfplqsygfqptngvgyqpyrvv
vlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiad
ttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltp
twrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaen
svaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctql
nraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllf
nkvtfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngig
vtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnf
gaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkms
ecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfp
regvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6x6pC (C:)
cvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtn
gtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefq
fcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvf
knidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgds
ssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyq
tsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasf
stfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvi
awnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqs
ygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvlte
snkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqd
vnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasy
qtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkt
svdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppi
kdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqk
fngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqn
vlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgais
svlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvl
gqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregv
fvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldk
yfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyip
eaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsggg
gsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6x6pC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaidnpvlpfndgvyfastek
sniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssannc
tfeyvsknlrefvfknidgyfkiyskhtpinlpqgfsaleplvdlpiginitrfqtllal
haayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvq
ptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcyg
vsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnl
dskvggnynylyrlfrksnlkpferdisteiyqagncyfplqsygfqptngvgyqpyrvv
vlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiad
ttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltp
twrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaen
svaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctql
nraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllf
nkvtfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngig
vtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnf
gaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkms
ecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfp
regvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpelds