PDB entry 6x4y

View 6x4y on RCSB PDB site
Description: mfd-bound e.coli rna polymerase elongation complex - iv state
Deposited on 2020-05-24, released 2021-02-03
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription-repair-coupling factor
    Species: Escherichia coli [TaxId:562]
    Gene: mfd, ACU57_04350, AUQ13_23175, BW690_23090, BZL31_08375, C5N07_18685, C9Z39_13430, CA593_22910, CI694_24470, CIG45_16475, D0X26_19775, D2185_03780, DAH34_08070, DBQ99_15575, E2119_09560, E4K55_21680, EAI52_08950, EEP23_04080, EI021_06895, EI028_16020, EIZ93_13025, EPT01_12285, EXX71_16985, EYD11_13865, F1E19_06650, FV293_24105, FWK02_07210, PGD_02181
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: DNA-directed RNA polymerase subunit alpha
    Species: Escherichia coli [TaxId:562]
    Gene: rpoA
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA-directed RNA polymerase subunit beta
    Species: Escherichia coli [TaxId:562]
    Gene: rpoB, Z5560, ECs4910
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: DNA-directed RNA polymerase subunit beta'
    Species: Escherichia coli [TaxId:562]
    Gene: rpoC, BvCmsKKP036_03580
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: DNA-directed RNA polymerase subunit omega
    Species: Escherichia coli [TaxId:562]
    Gene: rpoZ, Z5075, ECs4524
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: DNA (64-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'Q':
    Compound: DNA (64-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Chain 'R':
    Compound: RNA (20-mer)
    Species: Escherichia coli, synthetic [TaxId:562]
  • Heterogens: ADP, MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6x4yA (A:)
    mpeqyrytlpvkageqrllgeltgaacatlvaeiaerhagpvvliapdmqnalrlhdeis
    qftdqmvmnladwetlpydsfsphqdiissrlstlyqlptmqrgvlivpvntlmqrvcph
    sflhghalvmkkgqrlsrdalrtqldsagyrhvdqvmehgeyatrgalldlfpmgselpy
    rldffddeidslrvfdvdsqrtleeveainllpahefptdkaaielfrsqwrdtfevkrd
    pehiyqqvskgtlpagieywqplffseplpplfsyfpantllvntgdletsaerfqadtl
    arfenrgvdpmrpllppqslwlrvdelfselknwprvqlktehlptkaananlgfqklpd
    lavqaqqkapldalrkfletfdgpvvfsvesegrrealgellarikiapqrimrldeasd
    rgrylmigaaehgfvdtvrnlalicesdllgervarrrqdsrrtinpdtlirnlaelhig
    qpvvhlehgvgryagmttleaggitgeylmltyandaklyvpvsslhlisryaggaeena
    plhklggdawsrarqkaaekvrdvaaelldiyaqraakegfafkhdreqyqlfcdsfpfe
    ttpdqaqainavlsdmcqplamdrlvcgdvgfgktevamraaflavdnhkqvavlvpttl
    laqqhydnfrdrfanwpvriemisrfrsakeqtqilaevaegkidiligthkllqsdvkf
    kdlgllivdeehrfgvrhkerikamranvdiltltatpiprtlnmamsgmrdlsiiatpp
    arrlavktfvreydsmvvreailreilrggqvyylyndveniqkaaerlaelvpeariai
    ghgqmrerelervmndfhhqrfnvlvcttiietgidiptantiiieradhfglaqlhqlr
    grvgrshhqayawlltphpkamttdaqkrleaiasledlgagfalathdleirgagellg
    eeqsgsmetigfslymellenavdalkagrepsledltsqqtevelrmpsllpddfipdv
    ntrlsfykriasakteneleeikvelidrfgllpdpartlldiarlrqqaqklgirkleg
    nekggviefaeknhvnpawligllqkqpqhyrldgptrlkfiqdlserktriewvrqfmr
    eleenaia
    

    Sequence, based on observed residues (ATOM records):
    >6x4yA (A:)
    qyrytlpvkageqrllgeltgaacatlvaeiaerhagpvvliapdmqnalrlhdeisqft
    dqmvmnladwetlpydsfsphqdiissrlstlyqlptmqrgvlivpvntlmqrvcphsfl
    hghalvmkkgqrlsrdalrtqldsagyrhvdqvmehgeyatrgalldlfpmgselpyrld
    ffddeidslrvfdvdsqrtleeveainllpahefptdkaaielfrsqwrdtfevkrdpeh
    iyqqvskgtlpagieywqplffseplpplfsyfpantllvntgdletsaerfqadtlarf
    enrgvdpmrpllppqslwlrvdelfselknwprvqlktehlptkaananlgfqklpdlav
    qaqqkapldalrkfletfdgpvvfsvesegrrealgellarikiapqrimrldeasdrgr
    ylmigaaehgfvdtvrnlalicesdllgervarrrqdsrrtinpdtlirnlaelhigqpv
    vhlehgvgryagmttleaggitgeylmltyandaklyvpvsslhlisryaggaeenaplh
    klggdawsrarqkaaekvrdvaaelldiyaqraakegfafkhdreqyqlfcdsfpfettp
    dqaqainavlsdmcqplamdrlvcgdvgfgktevamraaflavdnhkqvavlvpttllaq
    qhydnfrdrfanwpvriemisrfrsakeqtqilaevaegkidiligthkllqsdvkfkdl
    gllivdeehrfgvrhkerikamranvdiltltatpiprtlnmamsgmrdlsiiatpparr
    lavktfvreydsmvvreailreilrggqvyylyndveniqkaaerlaelvpeariaighg
    qmrerelervmndfhhqrfnvlvcttiietgidiptantiiieradhfglaqlhqlrgrv
    grshhqayawlltphpkamttdaqkrleaiasledlgagfalathdleirgagellgeeq
    sgsmetigfslymellenavdalkagrepsledltsqqtevelrmpsllpddfipdvntr
    lsfykriasakteneleeikvelidrfgllpdpartlldiarlrqqaqklgirklegnek
    ggviefaeknhvnpawligllqkqpqhyrldgptrlkfiqdlserktriewvrqfmrele
    enai
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6x4yG (G:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6x4yG (G:)
    vteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgv
    lheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveiv
    kpqhvichltdenasismrikvqrgrgyvpastrirpigrllvdacyspveriaynveaa
    rveqrtdldklviemetngtidpeeairraatilaeqleafvdl
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6x4yH (H:)
    mqgsvteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteve
    idgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgd
    veivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspv
    eriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqp
    evkeekpefdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkksl
    teikdvlasrglslgmrlenwppasiade
    

    Sequence, based on observed residues (ATOM records):
    >6x4yH (H:)
    vteflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgv
    lheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveiv
    kpqhvichltdenasismrikvqrgrgyvpastrrllvdacyspveriaynveaarveqr
    tdldklviemetngtidpeeairraatilaeqleafv
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6x4yI (I:)
    mvysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiq
    sysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeq
    evymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyr
    gswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqme
    lvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakd
    yidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrl
    salveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgil
    skddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerls
    lgdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltr
    eragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvt
    deihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqv
    vsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakr
    ggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepverg
    dvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvs
    rdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeek
    llraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdl
    seelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqyde
    lkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskin
    piedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevak
    lrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellk
    lgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplg
    gkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmp
    esfnvllkeirslginielede
    

    Sequence, based on observed residues (ATOM records):
    >6x4yI (I:)
    vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqs
    ysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqe
    vymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrg
    swldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeirdnklqmel
    vperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdy
    idestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrls
    alveiyrmmrpgepptreaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgils
    kddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvrveravkerlsl
    gdldtlmpqdminakpisaavkeffgssqlsqfmdqnnplseithkrrisalgpggltre
    ragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtd
    eihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvv
    svgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrg
    gvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergd
    vladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsr
    dtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkdsslrvpngvs
    gtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggve
    aekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapg
    vlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvps
    rmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfs
    deevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpv
    tvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaay
    tlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginieled
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6x4yJ (J:)
    mkdllkflkaqtkteefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcar
    ifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflksl
    psrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakm
    gaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmilt
    vlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlq
    eavdalldngrrgraitgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpy
    lrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehp
    vllnraptlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlea
    ralmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsg
    laslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkka
    iskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeae
    vaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfn
    siymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgar
    kgladtalktansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvl
    grvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcyg
    rdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsikl
    snvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanw
    dphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalki
    vdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglpr
    vadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfe
    gervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqm
    lrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfi
    saasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraageapa
    apqvtaedasaslaellnaglggsdne
    

    Sequence, based on observed residues (ATOM records):
    >6x4yJ (J:)
    efdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgky
    krlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdi
    ervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdle
    qeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpl
    dggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgra
    itgsnkrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmale
    lfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraptlhrlgiq
    afepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspan
    gepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvritey
    ekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglk
    ptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvta
    gerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaa
    qirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalktansgy
    ltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtad
    ilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeai
    gviaaqsigepgtqltmrssiqvknkgsiklsnvksvvnssgklvitsrntelklidefg
    rtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrq
    tdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivql
    edgvqissgdtlaripqtgglprvadlfearrpkepailaeisgivsfgketkgkrrlvi
    tpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnev
    qdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangk
    vgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrli
    pagtgyayhqdrmrrr
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6x4yK (K:)
    marvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglin
    nqildvrerqeqqeqeaaelqavtaiaegrr
    

    Sequence, based on observed residues (ATOM records):
    >6x4yK (K:)
    arvtvqdavekignrfdlvlvaarrarqmqvggkdplvpeendkttvialreieeglinn
    qildvrerqeqqeqeaael
    

  • Chain 'P':
    No sequence available.

  • Chain 'Q':
    No sequence available.

  • Chain 'R':
    No sequence available.