SCOPe 2.08: Structural Classification of Proteins

PDB entry 6x2c

View 6x2c on RCSB PDB site
Description: sars-cov-2 u1s2q all down rbd state spike protein trimer
Deposited on 2020-05-20, released 2020-05-27
The last revision was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1192)
  - engineered mutation (554)
  - engineered mutation (556)
  - conflict (666-667)
  - conflict (669)
  - engineered mutation (839-840)
  - conflict (970-971)
  - expression tag (1193-1272)
Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1192)
  - engineered mutation (554)
  - engineered mutation (556)
  - conflict (666-667)
  - conflict (669)
  - engineered mutation (839-840)
  - conflict (970-971)
  - expression tag (1193-1272)
Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2 (0-1192)
  - engineered mutation (554)
  - engineered mutation (556)
  - conflict (666-667)
  - conflict (669)
  - engineered mutation (839-840)
  - conflict (970-971)
  - expression tag (1193-1272)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6x2cA (A:)
vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
nkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqky
igltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
sggsawshpqfek

Sequence, based on observed residues (ATOM records):

>6x2cA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtyigltvlpplltdemiaqytsallagtitsgwtfgagaalqi
pfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqna
qalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraa
eirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknft
tapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnnt
vydplqpelds

Chain 'B':
Sequence, based on SEQRES records:

>6x2cB (B:)
vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
nkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqky
igltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
sggsawshpqfek

Sequence, based on observed residues (ATOM records):

>6x2cB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtyigltvlpplltdemiaqytsallagtitsgwtfgagaalqi
pfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqna
qalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraa
eirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknft
tapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnnt
vydplqpelds

Chain 'C':
Sequence, based on SEQRES records:

>6x2cC (C:)
vnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvsgtng
tkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqf
cndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdss
sgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqt
snfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfs
tfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcvia
wnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsy
gfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltes
nkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdv
nctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigagicasyq
tqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkts
vdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppik
dfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaqky
igltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtqnv
lyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgaiss
vlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecvlg
qskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpregvf
vsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeldky
fknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqgsgyipe
aprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhsawshpqfekgggsgggg
sggsawshpqfek

Sequence, based on observed residues (ATOM records):

>6x2cC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdilditdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtyigltvlpplltdemiaqytsallagtitsgwtfgagaalqi
pfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqna
qalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraa
eirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknft
tapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnnt
vydplqpelds