PDB entry 6x03

View 6x03 on RCSB PDB site
Description: nup84-nup133 (aa521-1157) from s. cerevisiae bound by vhh-san8 and vhh-san9
Deposited on 2020-05-15, released 2020-12-09
The last revision was dated 2020-12-09, with a file datestamp of 2020-12-04.
Experiment type: XRAY
Resolution: 7.3 Å
R-factor: N/A
AEROSPACI score: -0.05 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleoporin NUP84
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: NUP84, YDL116W
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Nucleoporin NUP133
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: NUP133, RAT3, YKR082W, YKR402
    Database cross-references and differences (RAF-indexed):
    • Uniprot P36161 (6-642)
      • expression tag (4-5)
  • Chain 'C':
    Compound: vhh-san8
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6X03 (0-130)
  • Chain 'D':
    Compound: vhh-san9
    Species: Vicugna pacos [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 6X03 (0-127)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6x03A (A:)
    melsptyqterftkfsdtlkefkieqnneqnpidpfniirefrsaagqlaldlansgdes
    nvisskdwelearfwhlvelllvfrnadldldemelhpynsrglfekklmqdnkqlyqiw
    ivmvwlkentyvmerpknvptskwlnsitsgglkscdldfplrentnvldvkdkeedhif
    fkyiyelilagaidealeeaklsdnisicmilcgiqeylnpvidtqianefntqqgikkh
    slwrrtvyslsqqagldpyeraiysylsgaipnqevlqysdwesdlhihlnqilqteien
    yllennqvgtdelilplpshaltvqevlnrvasrhpsesehpirvlmasvildslpsvih
    ssvemlldvvkgteasndiidkpyllrivthlaicldiinpgsveevdksklittyisll
    klqglyenipiyatflnesdcleacsfilssledpqvrkkqietinflrlpasnilrrtt
    qrvfdeteqeyspsneisisfdvnnidmhliygvewliegklyvdavhsiialsrrflln
    grvkaleqfmernnigeicknyelekiadniskdenedqfleeitqyehlikgireyeew
    qksvsllssesniptlieklqgfskdtfeliktflvdltssnfadsadyeilyeiralyt
    pfllmelhkklveaakllkipkfisealaftslvanendkiyllfqssgklkeyldlvar
    tatlsn
    

    Sequence, based on observed residues (ATOM records):
    >6x03A (A:)
    yqterftkfsdtlkefkieqdpfniirefrsaagqlaldlansgdesnvisskdwelear
    fwhlvelllvfrnadldlddnkqlyqiwivmvwlkentyvmerpknvptskwlnsnvldv
    kdkeedhiffkyiyelilagaidealeeaklsdnisicmilcgiqeylnpvidtkhslwr
    rtvyslsqqagldpyeraiysylsgaipnqevlqysdwesdlhihlnqilqteienylle
    nnqvgtdelilplpshaltvqevlnrvasrhpsesehpirvlmasvildslpsvihssve
    mllddkpyllrivthlaicldiinpgsveevdksklittyisllklqglyenipiyatfl
    nesdcleacsfilssledpqvrkkqietinflrlpasnilrrttqrvfdeteqeyspsne
    isisfdvnnidmhliygvewliegklyvdavhsiialsrrfllngrvkaleqfmernnig
    eicknyelekiadniskdenedqfleeitqyehlikgireyeewqksvsllssesniptl
    ieklqgfskdtfeliktflvdltssnfadsadyeilyeiralytpfllmelhkklveaak
    llkipkfisealaftslvanendkiyllfqssgklkeyldlvartatlsn
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6x03B (B:)
    madpgfsldqesiehdlkltseeifhsngkyippmlntlgqhlsvrkeffqnfltfvakn
    fnykispelkldliekfeilnccikfnsiirqsdvlndiwektlsnynltqnehlttktv
    vinspdvfpvifkqflnhvvfvlfpsqnqnfklnvtnlinlcfydgileegektiryell
    eldpmevdtsklpwfinfdylncinqcffdftfaceeegsldsykegllkivkilyyqfn
    qfkiwintqpvksvnandnfininnlyddnhldwnhvlckvnlkeqciqiaefykdlsgl
    vqtlqtldqndsttvslyetffnefpkefsftlfeylikhkklndlifrfpqqhdvliqf
    fqesapkyghvawiqqildgsyadamntlknitvddskkgeslsecelhlnvaklssllv
    ekdnldintlrkiqynldtidaeknisnklkkgevqickrfkngsirevfnilveelkst
    tvvnlsdlvelysmlddeeslfiplrllsvdgnllnfevkkflnalvwrrivllnasneg
    dkllqhivkrvfdeelpknndfplpsvdllcdkslltpeyisetygrfpidqnaireeiy
    eeisqvetlnsdnsleiklhstigsvakeknytinyetntvey
    

    Sequence, based on observed residues (ATOM records):
    >6x03B (B:)
    gfsldqesiehdlkltseeifhsngkyippmlntlgqhlsvrkeffqnfltfvaknfnyk
    ispelkldliekfeilnccikfnsiirqsdvlndiwektlsnynltqnehlttktvvins
    pdvfpvifkqflnhvvfvlfpsqnqnfklnvtnlinlcfydgileegektipwfinfdyl
    ncinqcffdftfaceeegsldsykegllkivkilyyqfnqfkiwintqpvksvnandnfi
    ninnlyddnhldwnhvlckvnlkeqciqiaefykdlsglvqtlqtldqndsttvslyetf
    fnefpkefsftlfeylikhqqhdvliqffqesapkyghvawiqqildgsyadamntlkni
    tvddskkgeslsecelhlnvaklssintlrkiqynldtidaeknisnklkkgevqickrf
    kngsirevfnilveelksttvvnlsdlvelysmlddeeslfiplrllsvdgnllnfevkk
    flnalvwrrivllnasnegdkllqhivkrvfdeelpknndfplpsvdllcdkslltpeyi
    setygrfpidqnaireeiyeeisqvetlnsdnsleiklhstigsvakeknytinyetntv
    ey
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6x03C (C:)
    qlqlvetggglvqaggslrlscvasgrtftsyamgwfrqapgkerefvaaisrlasgtdy
    adsvkgrftisrnndkntvylqmnnlipedtavyycaalqalrfslpiamatmkngrads
    wgqgtqvtvss
    

    Sequence, based on observed residues (ATOM records):
    >6x03C (C:)
    qlqlvetggglvqaggslrlscvasgwfrqapgkerefvadyadsvkgrftisrnndknt
    vylqmnnlipedtavyycaagqgtqvtvss
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6x03D (D:)
    qvqlvesgggsvqaggslrlscavsggtlstlamgwfrqapgqerefvarigwtngdtgy
    adsvkgrftisrdnvkntvylqmnnlkpedtalyycatrrpygstlyppntesahdnwgq
    gtqvtvss
    

    Sequence, based on observed residues (ATOM records):
    >6x03D (D:)
    qvqlvesgggsvqaggslrlscavsgwfrqapgqerefvagyadsvkgrftisrdntvyl
    qmnnlkpedtalyycatgqgtqvtvss