PDB entry 6wzt

View 6wzt on RCSB PDB site
Description: cryoem structure of influenza hemagglutinin a/victoria/361/2011 in complex with cyno antibody 3b10
Deposited on 2020-05-14, released 2021-03-10
The last revision was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: EM
Resolution: 4.4 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1507389]
    Gene: HA, L998_47830gpHA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1507389]
    Gene: HA, L998_47830gpHA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1507389]
    Gene: HA, L998_47830gpHA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Cyno antibody light chain
    Species: Macaca fascicularis [TaxId:9541]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WZT (0-213)
  • Chain 'E':
    Compound: Cyno antibody heavy chain
    Species: Macaca fascicularis [TaxId:9541]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WZT (0-End)
  • Chain 'F':
    Compound: Cyno antibody light chain
    Species: Macaca fascicularis [TaxId:9541]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WZT (0-213)
  • Chain 'G':
    Compound: Cyno antibody heavy chain
    Species: Macaca fascicularis [TaxId:9541]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WZT (0-End)
  • Chain 'H':
    Compound: Cyno antibody heavy chain
    Species: Macaca fascicularis [TaxId:9541]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WZT (0-End)
  • Chain 'L':
    Compound: Cyno antibody light chain
    Species: Macaca fascicularis [TaxId:9541]
    Database cross-references and differences (RAF-indexed):
    • PDB 6WZT (0-213)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6wztA (A:)
    qklpgndnstatlclghhavpngtivktitndqievtnatelvqnssigeicdsphqild
    genctlidallgdpqcdgfqnkkwdlfverskaysncfpydvpdyaslrslvassgtlef
    nnesfnwtgvtqngtssacirrsnnsffsrlnwltqlnfkypalnvtmpnneqfdklyiw
    gvhhpvtdkdqiflyaqssgritvstkrsqqavipnigyrprirnipsrisiywtivkpg
    dillinstgnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnri
    tygacpryvkqstlklatgmrnvpekqtrgifgaiagfiengwegmvdgwygfrhqnseg
    rgqaadlkstqaaidqingklnrligktnekfhqiekefsevegriqdlekyvedtkidl
    wsynaellvalenqhtidltdsemnklfektkkqlrenaedmgngcfkiyhkcdnacigs
    irngtydhdvyrdealnnrfqik
    

    Sequence, based on observed residues (ATOM records):
    >6wztA (A:)
    statlclghhavpngtivktitndqievtnatelvqnssigeicdsphqildgenctlid
    allgdpqcdgfqnkkwdlfverskaysncfpydvpdyaslrslvassgtlefnnesfnwt
    gvtqngtssacirrsnnsffsrlnwltqlnfkypalnvtmpnneqfdklyiwgvhhpvtd
    kdqiflyaqssgritvstkrsqqavipnigyrprirnipsrisiywtivkpgdillinst
    gnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnritygacpry
    vkqstlklatgmrnvpekqtrgifgaiagfiengwegmvdgwygfrhqnsegrgqaadlk
    stqaaidqingklnrligktnekfhqiekefsevegriqdlekyvedtkidlwsynaell
    valenqhtidltdsemnklfektkkqlrenaedmgngcfkiyhkcdnacigsirngtydh
    dvyrdealnnrfqi
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6wztB (B:)
    qklpgndnstatlclghhavpngtivktitndqievtnatelvqnssigeicdsphqild
    genctlidallgdpqcdgfqnkkwdlfverskaysncfpydvpdyaslrslvassgtlef
    nnesfnwtgvtqngtssacirrsnnsffsrlnwltqlnfkypalnvtmpnneqfdklyiw
    gvhhpvtdkdqiflyaqssgritvstkrsqqavipnigyrprirnipsrisiywtivkpg
    dillinstgnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnri
    tygacpryvkqstlklatgmrnvpekqtrgifgaiagfiengwegmvdgwygfrhqnseg
    rgqaadlkstqaaidqingklnrligktnekfhqiekefsevegriqdlekyvedtkidl
    wsynaellvalenqhtidltdsemnklfektkkqlrenaedmgngcfkiyhkcdnacigs
    irngtydhdvyrdealnnrfqik
    

    Sequence, based on observed residues (ATOM records):
    >6wztB (B:)
    statlclghhavpngtivktitndqievtnatelvqnssigeicdsphqildgenctlid
    allgdpqcdgfqnkkwdlfverskaysncfpydvpdyaslrslvassgtlefnnesfnwt
    gvtqngtssacirrsnnsffsrlnwltqlnfkypalnvtmpnneqfdklyiwgvhhpvtd
    kdqiflyaqssgritvstkrsqqavipnigyrprirnipsrisiywtivkpgdillinst
    gnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnritygacpry
    vkqstlklatgmrnvpekqtrgifgaiagfiengwegmvdgwygfrhqnsegrgqaadlk
    stqaaidqingklnrligktnekfhqiekefsevegriqdlekyvedtkidlwsynaell
    valenqhtidltdsemnklfektkkqlrenaedmgngcfkiyhkcdnacigsirngtydh
    dvyrdealnnrfqi
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6wztC (C:)
    qklpgndnstatlclghhavpngtivktitndqievtnatelvqnssigeicdsphqild
    genctlidallgdpqcdgfqnkkwdlfverskaysncfpydvpdyaslrslvassgtlef
    nnesfnwtgvtqngtssacirrsnnsffsrlnwltqlnfkypalnvtmpnneqfdklyiw
    gvhhpvtdkdqiflyaqssgritvstkrsqqavipnigyrprirnipsrisiywtivkpg
    dillinstgnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnri
    tygacpryvkqstlklatgmrnvpekqtrgifgaiagfiengwegmvdgwygfrhqnseg
    rgqaadlkstqaaidqingklnrligktnekfhqiekefsevegriqdlekyvedtkidl
    wsynaellvalenqhtidltdsemnklfektkkqlrenaedmgngcfkiyhkcdnacigs
    irngtydhdvyrdealnnrfqik
    

    Sequence, based on observed residues (ATOM records):
    >6wztC (C:)
    statlclghhavpngtivktitndqievtnatelvqnssigeicdsphqildgenctlid
    allgdpqcdgfqnkkwdlfverskaysncfpydvpdyaslrslvassgtlefnnesfnwt
    gvtqngtssacirrsnnsffsrlnwltqlnfkypalnvtmpnneqfdklyiwgvhhpvtd
    kdqiflyaqssgritvstkrsqqavipnigyrprirnipsrisiywtivkpgdillinst
    gnliaprgyfkirsgkssimrsdapigkcnsecitpngsipndkpfqnvnritygacpry
    vkqstlklatgmrnvpekqtrgifgaiagfiengwegmvdgwygfrhqnsegrgqaadlk
    stqaaidqingklnrligktnekfhqiekefsevegriqdlekyvedtkidlwsynaell
    valenqhtidltdsemnklfektkkqlrenaedmgngcfkiyhkcdnacigsirngtydh
    dvyrdealnnrfqi
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6wztD (D:)
    diqmtqspsslsasvgdtvtitcrasqsisswlawyqqkpgkapklliykasslqggvps
    rfsgsgsgsdftltisslqsedfatyycqqysgrpptfgqgtkveikravaapsvfifpp
    sedqvksgtvsvvcllnnfypreasvkwkvdgalktgnsqesvteqdskdntyslsstlt
    lsstdyqshnvyacevthqglsspvtksfnrgec
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6wztE (E:)
    qvqlqesgpglvkpsetlsltcavsggtfsayywgwirqppgkglewigsisggsgstdy
    spslksratisrdtsknqfslkltsvtaadtavyycvrkywgdyyanwfdvwgpgvlvtv
    ssastkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlq
    ssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktcgggskppt
    

    Sequence, based on observed residues (ATOM records):
    >6wztE (E:)
    qvqlqesgpglvkpsetlsltcavsggtfsayywgwirqppgkglewigsisggsgstdy
    spslksratisrdtsknqfslkltsvtaadtavyycvrkywgdyyanwfdvwgpgvlvtv
    ssastkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlq
    ssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktc
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6wztF (F:)
    diqmtqspsslsasvgdtvtitcrasqsisswlawyqqkpgkapklliykasslqggvps
    rfsgsgsgsdftltisslqsedfatyycqqysgrpptfgqgtkveikravaapsvfifpp
    sedqvksgtvsvvcllnnfypreasvkwkvdgalktgnsqesvteqdskdntyslsstlt
    lsstdyqshnvyacevthqglsspvtksfnrgec
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6wztG (G:)
    qvqlqesgpglvkpsetlsltcavsggtfsayywgwirqppgkglewigsisggsgstdy
    spslksratisrdtsknqfslkltsvtaadtavyycvrkywgdyyanwfdvwgpgvlvtv
    ssastkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlq
    ssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktcgggskppt
    

    Sequence, based on observed residues (ATOM records):
    >6wztG (G:)
    qvqlqesgpglvkpsetlsltcavsggtfsayywgwirqppgkglewigsisggsgstdy
    spslksratisrdtsknqfslkltsvtaadtavyycvrkywgdyyanwfdvwgpgvlvtv
    ssastkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlq
    ssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktc
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6wztH (H:)
    qvqlqesgpglvkpsetlsltcavsggtfsayywgwirqppgkglewigsisggsgstdy
    spslksratisrdtsknqfslkltsvtaadtavyycvrkywgdyyanwfdvwgpgvlvtv
    ssastkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlq
    ssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktcgggskppt
    

    Sequence, based on observed residues (ATOM records):
    >6wztH (H:)
    qvqlqesgpglvkpsetlsltcavsggtfsayywgwirqppgkglewigsisggsgstdy
    spslksratisrdtsknqfslkltsvtaadtavyycvrkywgdyyanwfdvwgpgvlvtv
    ssastkgpsvfplapcsrstsestaalgclvkdyfpepvtvswnsgsltsgvhtfpavlq
    ssglyslssvvtvpssslgtqtyvcnvnhkpsntkvdkrveiktc
    

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6wztL (L:)
    diqmtqspsslsasvgdtvtitcrasqsisswlawyqqkpgkapklliykasslqggvps
    rfsgsgsgsdftltisslqsedfatyycqqysgrpptfgqgtkveikravaapsvfifpp
    sedqvksgtvsvvcllnnfypreasvkwkvdgalktgnsqesvteqdskdntyslsstlt
    lsstdyqshnvyacevthqglsspvtksfnrgec