PDB entry 6wy4

View 6wy4 on RCSB PDB site
Description: Crystal Structure of Wild Type Class D beta-lactamase from Clostridium difficile 630
Class: hydrolase
Keywords: Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID, blaD, HYDROLASE
Deposited on 2020-05-12, released 2020-05-27
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-27, with a file datestamp of 2020-05-22.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.38 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Beta-lactamase
    Species: Clostridioides difficile (strain 630) [TaxId:272563]
    Gene: CD630_04580
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6wy4a_
  • Chain 'B':
    Compound: Beta-lactamase
    Species: Clostridioides difficile (strain 630) [TaxId:272563]
    Gene: CD630_04580
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6wy4b_
  • Chain 'C':
    Compound: Beta-lactamase
    Species: Clostridioides difficile (strain 630) [TaxId:272563]
    Gene: CD630_04580
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q188Q3 (Start-250)
      • expression tag (251-254)
    Domains in SCOPe 2.08: d6wy4c1, d6wy4c2
  • Chain 'D':
    Compound: Beta-lactamase
    Species: Clostridioides difficile (strain 630) [TaxId:272563]
    Gene: CD630_04580
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q188Q3 (Start-250)
      • expression tag (251-254)
    Domains in SCOPe 2.08: d6wy4d1, d6wy4d2
  • Heterogens: KCX, PEG, NA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6wy4A (A:)
mvdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinsk
esvmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdi
sewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidv
ndkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiai
niikkyysvregaal

    Sequence, based on observed residues (ATOM records): (download) 
    >6wy4A (A:)
mvdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinsk
esvmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdi
sewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidv
ndkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiai
niikkyys

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6wy4B (B:)
mvdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinsk
esvmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdi
sewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidv
ndkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiai
niikkyysvregaal

    Sequence, based on observed residues (ATOM records): (download) 
    >6wy4B (B:)
vdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinske
svmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdis
ewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidvn
dkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiain
iikkyysv

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6wy4C (C:)
mvdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinsk
esvmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdi
sewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidv
ndkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiai
niikkyysvregaal

    Sequence, based on observed residues (ATOM records): (download) 
    >6wy4C (C:)
vdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinske
svmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdis
ewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidvn
dkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiain
iikkyysvregaal

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6wy4D (D:)
mvdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinsk
esvmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdi
sewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidv
ndkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiai
niikkyysvregaal

    Sequence, based on observed residues (ATOM records): (download) 
    >6wy4D (D:)
vdysdcfegisggaifyntknkeyniynkelietrrspcstfkivstliglekgvinske
svmgydgteypnknwnknlsleeafkescvwyykklidkvdaksvqnilddlkygncdis
ewegdlkngkghlngfwlesslqispkeqvqtmakifegdtnfkkehinilrdimkidvn
dkninvygktgtgfdeknkrvdawfvgmleregdtyyfaiksddsnkeitgpkvkeiain
iikkyysvregaal