PDB entry 6wqn

View 6wqn on RCSB PDB site
Description: structure of the 50s subunit of the ribosome from methicillin resistant staphylococcus aureus in complex with the antibiotic, contezolid
Deposited on 2020-04-29, released 2020-06-03
The last revision was dated 2020-12-16, with a file datestamp of 2020-12-11.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 23s rRNA
    Species: Staphylococcus aureus [TaxId:1280]
  • Chain '2':
    Compound: 5s rRNA
    Species: Staphylococcus aureus [TaxId:1280]
  • Chain 'A':
    Compound: 50S ribosomal protein L19
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 50S ribosomal protein L2
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 50S ribosomal protein L20
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L21
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L22
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L23
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L24
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 50S ribosomal protein L25
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 50S ribosomal protein L27
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 50S ribosomal protein L28
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 50S ribosomal protein L29
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 50S ribosomal protein L3
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 50S ribosomal protein L30
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L32
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L33
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L34
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L35
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L36
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L4
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L13
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: 50S ribosomal protein L14
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L15
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L16
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L17
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: 50S ribosomal protein L18
    Species: Staphylococcus aureus [TaxId:1280]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZC0

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain '2':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6wqnA (A:)
    mtnhklieavtksqlrtdlpsfrpgdtlrvhvriiegtreriqvfegvvikrrgggvset
    ftvrkissgvgvertfplhtpkiekievkrrgkvrraklyylrslrgkaariqeir
    

    Sequence, based on observed residues (ATOM records):
    >6wqnA (A:)
    hklieavtksqlrtdlpsfrpgdtlrvhvriiegtreriqvfegvvikrrgggvsetftv
    rkissgvgvertfplhtpkiekievkrrgkvrraklyylrslrgkaariqei
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6wqnB (B:)
    maikkykpitngrrnmtsldfaeitkttpeksllkplpkkagrnnqgkltvrhhggghkr
    qyrvidfkrnkdginakvdsiqydpnrsanialvvyadgekryiiapkglevgqivesga
    eadikvgnalplqnipvgtvvhnielkpgkggqiarsagasaqvlgkegkyvlirlrsge
    vrmilstcratigqvgnlqhelvnvgkagrsrwkgirptvrgsvmnpndhphgggegrap
    igrpspmspwgkptlgkktrrgkkssdklivrgrkkk
    

    Sequence, based on observed residues (ATOM records):
    >6wqnB (B:)
    aikkykpitngrrnmtsldfaeitkttpeksllkplpkkagrnnqgkltvrhhggghkrq
    yrvidfkrnkdginakvdsiqydpnrsanialvvyadgekryiiapkglevgqivesgae
    adikvgnalplqnipvgtvvhnielkpgkggqiarsagasaqvlgkegkyvlirlrsgev
    rmilstcratigqvgnlqhelvnvgkagrsrwkgirptvrgsvmnpndhphgggegrapi
    grpspmspwgkptlgkktrrgkkssdklivrgrk
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6wqnC (C:)
    mprvkggtvtrarrkktiklakgyfgskhtlykvakqqvmksgqyafrdrrqrkrdfrkl
    witrinaaarqhemsysrlmnglkkagidinrkmlseiaisdekafaqlvtkakdalk
    

    Sequence, based on observed residues (ATOM records):
    >6wqnC (C:)
    prvkggtvtrarrkktiklakgyfgskhtlykvakqqvmksgqyafrdrrqrkrdfrklw
    itrinaaarqhemsysrlmnglkkagidinrkmlseiaisdekafaqlvtkakdal
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6wqnD (D:)
    mqsmfaiietggkqikveegqeifvekldvnegdtftfdkvlfvggdsvkvgaptvegat
    vtatvnkqgrgkkitvftykrrknskrkkghrqpytkltidkina
    

    Sequence, based on observed residues (ATOM records):
    >6wqnD (D:)
    mfaiietggkqikveegqeifvekldvnegdtftfdkvlfvggdsvkvgaptvegatvta
    tvnkqgrgkkitvftykrrknskrkkghrqpytkltidki
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6wqnE (E:)
    meakavartiriaprkvrlvldlirgknaaeaiailkltnkasspviekvlmsalanaeh
    nydmntdelvvkeayanegptlkrfrpraqgrasainkrtshitivvsdakeeakea
    

    Sequence, based on observed residues (ATOM records):
    >6wqnE (E:)
    eakavartiriaprkvrlvldlirgknaaeaiailkltnkasspviekvlmsalanaehn
    ydmntdelvvkeayanegptlkrfrpraqgrasainkrtshitivvsdak
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6wqnF (F:)
    meardilkrpviteksseamaedkytfdvdtrvnktqvkmaveeifnvkvasvnimnykp
    kkkrmgryqgytnkrrkaivtlkegsddlfn
    

    Sequence, based on observed residues (ATOM records):
    >6wqnF (F:)
    rdilkrpviteksseamaedkytfdvdtrvnktqvkmaveeifnvkvasvnimnykpkkk
    qgytnkrrkaivtlkegsddl
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6wqnG (G:)
    mhikkgdnvkviagkdkgkegkviatlpkkdrvvvegvnimkkhqkptqlnpesgilete
    aaihvsnvqlldpktneptrvgykfvdgkkvriakksgeeiksnn
    

    Sequence, based on observed residues (ATOM records):
    >6wqnG (G:)
    hikkgdnvkviagkdkgkegkviatlpkkdrvvvegvnimkkhqgileteaaihvsnvql
    ldpktneptrvgykfvdgkkvriakksgeei
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6wqnH (H:)
    maslksiirqgkqtrsdlkqlrksgkvpavvygygtknvsvkvdevefikvirevgrngv
    ielgvgsktikvmvadyqfdplknqithidflainmsedvllkyqfn
    

    Sequence, based on observed residues (ATOM records):
    >6wqnH (H:)
    aslksiirqgkqtrsdlkqlrksgkvpavvygygtknvsvkvdevefikvirevgrngvi
    elgvgsktikvmvadyqfdplknqithidflai
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6wqnI (I:)
    askkgvsstkngrdseskrlgakradgqfvtggsilyrqrgtkiypgenvgrggddtlfa
    kidgvvkferkgrdkkqvsvyavae
    

    Sequence, based on observed residues (ATOM records):
    >6wqnI (I:)
    sstkngrdseskrlgakradgqfvtggsilyrqrgtkiypgenvgrggddtlfakidgvv
    kferkgrdkkqvsvyava
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6wqnJ (J:)
    mgkqcfvtgrkastgnrrshalnstkrrwnanlqkvrilvdgkpkkvwvsaralksgkvt
    ra
    

    Sequence, based on observed residues (ATOM records):
    >6wqnJ (J:)
    gkqcfvtgrkastgnrrshalnstkrrwnanlqkvrilvdgkpkkvwvsaralksgkvt
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6wqnK (K:)
    mkkkkakeirnlttseieeqiksskeelfnlrfqlatgqleetarirtvrktiarlktva
    rereieqskanq
    

    Sequence, based on observed residues (ATOM records):
    >6wqnK (K:)
    lttseieeqiksskeelfnlrfqlatgqleetarirtvrktiarlktvarere
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6wqnL (L:)
    mtkgilgrkigmtqvfgengelipvtvveakenvvlqkktvevdgynaiqvgfedkkayk
    kdaksnkyankpaeghakkadaapkrfirefrnvdvdayevgqevsvdtfvagdvidvtg
    vskgkgfqgaikrhgqsrgpmshgshfhrapgsvgmasdasrvfkgqkmpgrmggntvtv
    qnlevvqvdtenkvilvkgnvpgpkkglveirtsikk
    

    Sequence, based on observed residues (ATOM records):
    >6wqnL (L:)
    tkgilgrkigmtqvfgengelipvtvveakenvvlqkktvevdgynaiqvgfedkkaykk
    daksnkyankpaeghakkadaapkrfirefrnvdvdayevgqevsvdtfvagdvidvtgv
    skgkgfqgaikrhgqsrgpmshgshfhrapgsvgmasdasrvfkgqkmpgrmggntvtvq
    nlevvqvdtenkvilvkgnvpgpkkglveirtsik
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6wqnM (M:)
    aklqitltrsvigrpetqrktvealglkktnssvvvednpairgqinkvkhlvtveek
    

    Sequence, based on observed residues (ATOM records):
    >6wqnM (M:)
    aklqitltrsvigrpetqrktvealglkktnssvvvednpairgqinkvkhlvtve
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6wqnN (N:)
    mavpkrrtsktrknkrrthfkisvpgmtecpncgeyklshrvckncgsyngeeaaak
    

    Sequence, based on observed residues (ATOM records):
    >6wqnN (N:)
    avpkrrtsktrknkrrthfkisvpgmtecpncgeyklshrvckncgsyng
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6wqnO (O:)
    mrvnvtlactecgdrnyittknkrnnpervemkkfcsrenkqtlhretk
    

    Sequence, based on observed residues (ATOM records):
    >6wqnO (O:)
    mrvnvtlactecgdrnyittknkrnnpervemkkfcsrenkqtlhre
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6wqnP (P:)
    mevfcmvkrtyqpnkrkhskvhgfrkrmstkngrkvlarrrrkgrkvlsa
    

    Sequence, based on observed residues (ATOM records):
    >6wqnP (P:)
    vkrtyqpnkrkhskvhgfrkrmstkngrkvlarrrrkgrkvlsa
    

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6wqnQ (Q:)
    mpkmkthrgaakrvkrtasgqlkrsraftshlfankstkqkrqlrkarlvsksdmkrvkq
    llayk
    

    Sequence, based on observed residues (ATOM records):
    >6wqnQ (Q:)
    pkmkthrgaakrvkrtasgqlkrsraftshlfankstkqkrqlrkarlvsksdmkrvkql
    layk
    

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6wqnR (R:)
    mkvrpsvkpicekckvikrkgkvmvicenpkhkqrqg
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6wqnS (S:)
    manydvlkldgtksgsielsdavfgiepnnsvlfeainlqraslrqgthavknrsavsgg
    grkpwkqkgtgrarqgtirapqwrgggivfgptprsyaykmpkkmrrlalrsalsfkvqe
    ngltvvdafnfeapktkefknvlstleqpkkvlvvtenedvnvelsarnipgvqvttaqg
    lnvlditnadslviteaaakkveevlg
    

    Sequence, based on observed residues (ATOM records):
    >6wqnS (S:)
    sielsdavfgiepnnsvlfeainlqraslrqgthavknrsavsgggrkpwkqkgtgrarq
    gtirapqwrgggivfgptprsyaykmpkkmrrlalrsalsfkvqengltvvdafnfeapk
    tkefknvlstleqpkkvlvvtenedvnvelsarnipgvqvttaqglnvlditnadslvit
    eaaakkveevlg
    

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6wqnV (V:)
    mrqtfmanesnierkwyvidaegqtlgrlssevasilrgknkvtytphvdtgdyvivina
    skieftgnketdkvyyrhsnhpggiksitagelrrtnperliensikgmlpstrlgekqg
    kklfvyggaehphaaqqpenyelrg
    

    Sequence, based on observed residues (ATOM records):
    >6wqnV (V:)
    rqtfmanesnierkwyvidaegqtlgrlssevasilrgknkvtytphvdtgdyvivinas
    kieftgnketdkvyyrhsnhpggiksitagelrrtnperliensikgmlpstrlgekqgk
    klfvyggaehphaaqqpenyelr
    

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6wqnW (W:)
    miqqetrlkvadnsgarevltikvlggsgrktanigdvivctvknatpggvvkkgdvvka
    vivrtksgvrrndgsyikfdenacviirddkgprgtrifgpvarelregnfmkivslape
    vl
    

    Sequence, based on observed residues (ATOM records):
    >6wqnW (W:)
    miqqetrlkvadnsgarevltikvlggsgrktanigdvivctvknatpggvvkkgdvvka
    vivrtksgvrrndgsyikfdenacviirddkgprgtrifgpvarelregnfmkivslape
    v
    

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6wqnX (X:)
    mklhelkpaegsrkernrvgrgvatgngktsgrghkgqkarsgggvrpgfeggqlplfrr
    lpkrgftninrkeyaivnldqlnkfedgtevtpallvesgvvkneksgikilgngsldkk
    ltvkahkfsasaaeaidakggahevi
    

    Sequence, based on observed residues (ATOM records):
    >6wqnX (X:)
    klhelkpaegsrkernrvgrgvatgngktsgrghkgqkarsgggvrpgfeggqlplfrrl
    pkrgftninrkeyaivnldqlnkfedgtevtpallvesgvvkneksgikilgngsldkkl
    tvkahkfsasaaeaidakggahev
    

  • Chain 'Y':
    Sequence, based on SEQRES records:
    >6wqnY (Y:)
    mllpkrvkyrrqhrpkttgrskggnyvtfgefglqatttswitsrqiesariamtrymkr
    ggkvwikifphtpytkkplevrmgagkgavegwiavvkpgrilfevagvseevarealrl
    ashklpvktkfvkreelggetnes
    

    Sequence, based on observed residues (ATOM records):
    >6wqnY (Y:)
    mllpkrvkyrrqhrpkttgrskggnyvtfgefglqatttswitsrqiesariamtrymkr
    ggkvwikifphtpytkkplevrmgagkgavegwiavvkpgrilfevagvseevarealrl
    ashklpvktkfvkree
    

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6wqnZ (Z:)
    mgyrklgrtsdqrkamlrdlatsliiseriettearakevrsvveklitlgkkgdlasrr
    naaktlrnveilnedettqtalqklfgeiaeryterqggytrilkqgprrgdgaesviie
    lv
    

    Sequence, based on observed residues (ATOM records):
    >6wqnZ (Z:)
    yrklgrtsdqrkamlrdlatsliiseriettearakevrsvveklitlgkkgdlasrrna
    aktlrnveilnedettqtalqklfgeiaeryterqggytrilkqgprrgdgaesviielv
    

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6wqna (a:)
    miskidknkvrlkrharvrtnlsgtaekprlnvyrsnkhiyaqiiddnkgvtlaqasskd
    sdiattatkvelatkvgeaiakkaadkgikeivfdrggylyhgrvkalaeaaresglef
    

    Sequence, based on observed residues (ATOM records):
    >6wqna (a:)
    kidknkvrlkrharvrtnlsgtaekprlnvyrsnkhiyaqiiddnkgvtlaqassktatk
    velatkvgeaiakkaadkgikeivfdrggylyhgrvkalaeaaresglef