PDB entry 6wpi

View 6wpi on RCSB PDB site
Description: crystal structure of nop9 in complex with its1 rna
Deposited on 2020-04-27, released 2020-05-20
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-24.
Experiment type: XRAY
Resolution: 3.02 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleolar protein 9
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: NOP9, YJL010C, J1357
    Database cross-references and differences (RAF-indexed):
    • Uniprot P47077
      • linker (118-120)
      • conflict (375)
  • Chain 'B':
    Compound: RNA (47-mer)
    Species: Saccharomyces cerevisiae S288c, synthetic [TaxId:559292]
  • Chain 'C':
    Compound: RNA (47-mer)
    Species: Saccharomyces cerevisiae S288c, synthetic [TaxId:559292]
  • Heterogens: TCE, GOL

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6wpiA (A:)
    etqpqmffgvldreeleyfkqaestlqldafeapeekfqfvtsiieeakgkelklvtsqi
    tsklmervilecdetqlkdifqsfngvffglschkyashvletlfvrsaalverelltsg
    svtmenmflfmlnelkphlktmmnhqyashvlrllililssktlpnstkanstlrskksk
    iarkmidikdnddfnkvyqtpesfkselrdiittlykgftngaesrsdisqstitkfrey
    svdkvaspviqliiqvegifdrdrsfwrlvfntadekdpkeesfleyllsdpvgshflen
    vigsarlkyverlyrlymkdrivklakrdttgafvvrallehlkekdvkqildavvpels
    mllnsnmdfgtaiintsnkqggylrddviaqliqkyypeksdaknilesclllsastlgn
    trddwptaeerrrsvfleqlidyddkflnitidsmlalpeerliqmcyhgvfshvvehvl
    qttrvdiikrkmllnilskesvnlacnvygshimdklweftakltlykeriaralvlete
    kvknsiygrqvwknwklelyvrkmwdwkklikeqefeifpnskplqpkpek
    

    Sequence, based on observed residues (ATOM records):
    >6wpiA (A:)
    tqpqmffgvldreeleyfkqaestlqldafeapeekfqfvtsiieeakgkelklvtsqit
    sklmervilecdetqlkdifqsfngvffglschkyashvletlfvrsaalverelltsgs
    vtmenmflfmlnelkphlktmmnhqyashvlrllililssktlpvyqtpesfkselrdii
    ttlykgftngaesrsdisqstitkfreysvdkvaspviqliiqvegifdrdrsfwrlvfn
    tadekdpkeesfleyllsdpvgshflenvigsarlkyverlyrlymkdrivklakrdttg
    afvvrallehlkekdvkqildavvpelsmllnsnmdfgtaiintsnkqggylrddviaql
    iqkyypeksdaknilesclllsastlgntrddwptaeerrrsvfleqlidyddkflniti
    dsmlalpeerliqmcyhgvfshvvehvlqttrvdiikrkmllnilskesvnlacnvygsh
    imdklweftakltlykeriaralvletekvknsiygrqvwknwklelyvrkmwdwkklik
    eqefeifp
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.