PDB entry 6wn6

View 6wn6 on RCSB PDB site
Description: crystal structure of 3-keto-d-glucoside 4-epimerase, ycjr, from e. coli, apo form
Deposited on 2020-04-22, released 2020-06-10
The last revision was dated 2020-06-17, with a file datestamp of 2020-06-12.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: 3-keto-D-glucoside 4-epimerase
    Species: Escherichia coli [TaxId:562]
    Gene: ycjR, PGD_01932
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 3-keto-D-glucoside 4-epimerase
    Species: Escherichia coli [TaxId:562]
    Gene: ycjR, PGD_01932
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 3-keto-D-glucoside 4-epimerase
    Species: Escherichia coli [TaxId:562]
    Gene: ycjR, PGD_01932
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 3-keto-D-glucoside 4-epimerase
    Species: Escherichia coli [TaxId:562]
    Gene: ycjR, PGD_01932
    Database cross-references and differences (RAF-indexed):
  • Heterogens: EDO, MN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6wn6A (A:)
mhhhhhhssglvprgsgmketaaakferqhmdspdlgtddddkamadigskkmkigtqnq
affpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvttacggydgwigd
fieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsldgdrkmvsds
lrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiigdfyhmnieed
nlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvvyegriraedp
aqayrdslawlrtc

    Sequence, based on observed residues (ATOM records):
    >6wn6A (A:)
kmkigtqnqaffpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvttac
ggydgwigdfieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsld
gdrkmvsdslrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiigd
fyhmnieednlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvvy
egriraedpaqayrdslawlrtc

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6wn6B (B:)
mhhhhhhssglvprgsgmketaaakferqhmdspdlgtddddkamadigskkmkigtqnq
affpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvttacggydgwigd
fieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsldgdrkmvsds
lrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiigdfyhmnieed
nlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvvyegriraedp
aqayrdslawlrtc

    Sequence, based on observed residues (ATOM records):
    >6wn6B (B:)
kkmkigtqnqaffpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvtta
cggydgwigdfieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsl
dgdrkmvsdslrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiig
dfyhmnieednlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvv
yegriraedpaqayrdslawlrtc

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6wn6C (C:)
mhhhhhhssglvprgsgmketaaakferqhmdspdlgtddddkamadigskkmkigtqnq
affpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvttacggydgwigd
fieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsldgdrkmvsds
lrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiigdfyhmnieed
nlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvvyegriraedp
aqayrdslawlrtc

    Sequence, based on observed residues (ATOM records):
    >6wn6C (C:)
kkmkigtqnqaffpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvtta
cggydgwigdfieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsl
dgdrkmvsdslrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiig
dfyhmnieednlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvv
yegriraedpaqayrdslawlrtc

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6wn6D (D:)
mhhhhhhssglvprgsgmketaaakferqhmdspdlgtddddkamadigskkmkigtqnq
affpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvttacggydgwigd
fieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsldgdrkmvsds
lrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiigdfyhmnieed
nlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvvyegriraedp
aqayrdslawlrtc

    Sequence, based on observed residues (ATOM records):
    >6wn6D (D:)
kkmkigtqnqaffpenilekfryikemgfdgfeidgkllvnnieevkaaiketglpvtta
cggydgwigdfieerrlnglkqierilealaevggkgivvpaawgmftfrlppmtsprsl
dgdrkmvsdslrvleqvaartgtvvyleplnryqdhmintladarryivendlkhvqiig
dfyhmnieednlaqalhdnrdllghvhiadnhryqpgsgtldfhalfeqlradnyqgyvv
yegriraedpaqayrdslawlrtc