PDB entry 6wg7

View 6wg7 on RCSB PDB site
Description: coordinates of nanr dimer fitted in hexameric nanr-dna hetero-complex cryo-em map
Deposited on 2020-04-05, released 2021-03-10
The last revision was dated 2021-04-14, with a file datestamp of 2021-04-09.
Experiment type: EM
Resolution: 8.3 Å
R-factor: N/A
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA (35-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'B':
    Compound: DNA (35-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'C':
    Compound: HTH-type transcriptional repressor NanR
    Species: Escherichia coli [TaxId:562]
    Gene: yhcK, glcC_1, glcC_2, lutR_1, lutR_2, nanR, nanR_2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: HTH-type transcriptional repressor NanR
    Species: Escherichia coli [TaxId:562]
    Gene: yhcK, glcC_1, glcC_2, lutR_1, lutR_2, nanR, nanR_2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: HTH-type transcriptional repressor NanR
    Species: Escherichia coli [TaxId:562]
    Gene: yhcK, glcC_1, glcC_2, lutR_1, lutR_2, nanR, nanR_2
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: HTH-type transcriptional repressor NanR
    Species: Escherichia coli [TaxId:562]
    Gene: yhcK, glcC_1, glcC_2, lutR_1, lutR_2, nanR, nanR_2
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: HTH-type transcriptional repressor NanR
    Species: Escherichia coli [TaxId:562]
    Gene: yhcK, glcC_1, glcC_2, lutR_1, lutR_2, nanR, nanR_2
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: HTH-type transcriptional repressor NanR
    Species: Escherichia coli [TaxId:562]
    Gene: yhcK, glcC_1, glcC_2, lutR_1, lutR_2, nanR, nanR_2
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6wg7C (C:)
mglmnafdsqtedsspaigrnlrsrplarkklsemveeeleqmirrrefgegeqlpsere
lmaffnvgrpsvrealaalkrkglvqinngerarvsrpsadtiigelsgmakdflshpgg
iahfeqlrlffesslvryaaehatdeqidllakaleinsqsldnnaafirsdvdfhrvla
eipgnpifmaihvalldwliaarptvtdqalhehnnvsyqqhiaivdairrhdpdeadra
lqshlnsvsatwhafgqttnkkk

    Sequence, based on observed residues (ATOM records):
    >6wg7C (C:)
nlrsrplarkklsemveeeleqmirrrefgegeqlpserelmaffnvgrpsvrealaalk
rkglvqinngerarvsrpsadtiigelsgmakdflshpggiahfeqlrlffesslvryaa
ehatdeqidllakaleinsqsldnnaafirsdvdfhrvlaeipgnpifmaihvalldwli
aarptvtdqalhehnnvsyqqhiaivdairrhdpdeadralqshlnsv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6wg7D (D:)
mglmnafdsqtedsspaigrnlrsrplarkklsemveeeleqmirrrefgegeqlpsere
lmaffnvgrpsvrealaalkrkglvqinngerarvsrpsadtiigelsgmakdflshpgg
iahfeqlrlffesslvryaaehatdeqidllakaleinsqsldnnaafirsdvdfhrvla
eipgnpifmaihvalldwliaarptvtdqalhehnnvsyqqhiaivdairrhdpdeadra
lqshlnsvsatwhafgqttnkkk

    Sequence, based on observed residues (ATOM records):
    >6wg7D (D:)
kklsemveeeleqmirrrefgegeqlpserelmaffnvgrpsvrealaalkrkglvqinn
gerarvsrpsadtiigelsgmakdflshpggiahfeqlrlffesslvryaaehatdeqid
llakaleinsqsldnnaafirsdvdfhrvlaeipgnpifmaihvalldwliaarptvtdq
alhehnnvsyqqhiaivdairrhdpdeadralqshlnsv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6wg7E (E:)
mglmnafdsqtedsspaigrnlrsrplarkklsemveeeleqmirrrefgegeqlpsere
lmaffnvgrpsvrealaalkrkglvqinngerarvsrpsadtiigelsgmakdflshpgg
iahfeqlrlffesslvryaaehatdeqidllakaleinsqsldnnaafirsdvdfhrvla
eipgnpifmaihvalldwliaarptvtdqalhehnnvsyqqhiaivdairrhdpdeadra
lqshlnsvsatwhafgqttnkkk

    Sequence, based on observed residues (ATOM records):
    >6wg7E (E:)
nlrsrplarkklsemveeeleqmirrrefgegeqlpserelmaffnvgrpsvrealaalk
rkglvqinngerarvsrpsadtiigelsgmakdflshpggiahfeqlrlffesslvryaa
ehatdeqidllakaleinsqsldnnaafirsdvdfhrvlaeipgnpifmaihvalldwli
aarptvtdqalhehnnvsyqqhiaivdairrhdpdeadralqshlnsv

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6wg7F (F:)
mglmnafdsqtedsspaigrnlrsrplarkklsemveeeleqmirrrefgegeqlpsere
lmaffnvgrpsvrealaalkrkglvqinngerarvsrpsadtiigelsgmakdflshpgg
iahfeqlrlffesslvryaaehatdeqidllakaleinsqsldnnaafirsdvdfhrvla
eipgnpifmaihvalldwliaarptvtdqalhehnnvsyqqhiaivdairrhdpdeadra
lqshlnsvsatwhafgqttnkkk

    Sequence, based on observed residues (ATOM records):
    >6wg7F (F:)
nlrsrplarkklsemveeeleqmirrrefgegeqlpserelmaffnvgrpsvrealaalk
rkglvqinngerarvsrpsadtiigelsgmakdflshpggiahfeqlrlffesslvryaa
ehatdeqidllakaleinsqsldnnaafirsdvdfhrvlaeipgnpifmaihvalldwli
aarptvtdqalhehnnvsyqqhiaivdairrhdpdeadralqshlnsv

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6wg7G (G:)
mglmnafdsqtedsspaigrnlrsrplarkklsemveeeleqmirrrefgegeqlpsere
lmaffnvgrpsvrealaalkrkglvqinngerarvsrpsadtiigelsgmakdflshpgg
iahfeqlrlffesslvryaaehatdeqidllakaleinsqsldnnaafirsdvdfhrvla
eipgnpifmaihvalldwliaarptvtdqalhehnnvsyqqhiaivdairrhdpdeadra
lqshlnsvsatwhafgqttnkkk

    Sequence, based on observed residues (ATOM records):
    >6wg7G (G:)
kklsemveeeleqmirrrefgegeqlpserelmaffnvgrpsvrealaalkrkglvqinn
gerarvsrpsadtiigelsgmakdflshpggiahfeqlrlffesslvryaaehatdeqid
llakaleinsqsldnnaafirsdvdfhrvlaeipgnpifmaihvalldwliaarptvtdq
alhehnnvsyqqhiaivdairrhdpdeadralqshlnsv

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6wg7H (H:)
mglmnafdsqtedsspaigrnlrsrplarkklsemveeeleqmirrrefgegeqlpsere
lmaffnvgrpsvrealaalkrkglvqinngerarvsrpsadtiigelsgmakdflshpgg
iahfeqlrlffesslvryaaehatdeqidllakaleinsqsldnnaafirsdvdfhrvla
eipgnpifmaihvalldwliaarptvtdqalhehnnvsyqqhiaivdairrhdpdeadra
lqshlnsvsatwhafgqttnkkk

    Sequence, based on observed residues (ATOM records):
    >6wg7H (H:)
kklsemveeeleqmirrrefgegeqlpserelmaffnvgrpsvrealaalkrkglvqinn
gerarvsrpsadtiigelsgmakdflshpggiahfeqlrlffesslvryaaehatdeqid
llakaleinsqsldnnaafirsdvdfhrvlaeipgnpifmaihvalldwliaarptvtdq
alhehnnvsyqqhiaivdairrhdpdeadralqshlnsv