PDB entry 6we9

View 6we9 on RCSB PDB site
Description: yth domain of human ythdc1 with 11mer ssdna containing n6ma
Deposited on 2020-04-01, released 2020-07-15
The last revision was dated 2020-10-21, with a file datestamp of 2020-10-16.
Experiment type: XRAY
Resolution: 1.59 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: YTH domain-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: YTHDC1, KIAA1966, YT521
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96MU7 (1-End)
      • expression tag (0)
  • Chain 'B':
    Compound: DNA (5'-d(*cp*gp*cp*gp*gp*(6ma)p*cp*tp*cp*tp*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Chain 'C':
    Compound: YTH domain-containing protein 1
    Species: Homo sapiens [TaxId:9606]
    Gene: YTHDC1, KIAA1966, YT521
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q96MU7 (1-End)
      • expression tag (0)
  • Chain 'F':
    Compound: DNA (5'-d(*cp*gp*cp*gp*gp*(6ma)p*cp*tp*cp*tp*g)-3')
    Species: HOMO SAPIENS, synthetic [TaxId:9606]
  • Heterogens: 6MA, EDO, SO4, GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6we9A (A:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkmrh

    Sequence, based on observed residues (ATOM records):
    >6we9A (A:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6we9C (C:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkmrh

    Sequence, based on observed residues (ATOM records):
    >6we9C (C:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm

  • Chain 'F':
    No sequence available.