PDB entry 6wdz

View 6wdz on RCSB PDB site
Description: porcine circovirus 2 rep domain complexed with a single-stranded dna 10-mer comprising the cleavage site
Deposited on 2020-04-01, released 2020-12-16
The last revision was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: XRAY
Resolution: 2.03 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP-dependent helicase Rep
    Species: Porcine circovirus 2 [TaxId:85708]
    Gene: rep
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(*tp*ap*gp*tp*ap*tp*tp*ap*cp*c)-3')
    Species: Porcine circovirus 2, synthetic [TaxId:85708]
  • Chain 'D':
    Compound: ATP-dependent helicase Rep
    Species: Porcine circovirus 2 [TaxId:85708]
    Gene: rep
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: DNA (5'-d(*tp*ap*gp*tp*ap*tp*tp*ap*cp*c)-3')
    Species: Porcine circovirus 2, synthetic [TaxId:85708]
  • Chain 'G':
    Compound: ATP-dependent helicase Rep
    Species: Porcine circovirus 2 [TaxId:85708]
    Gene: rep
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: DNA (5'-d(*tp*ap*gp*tp*ap*tp*tp*ap*cp*c)-3')
    Species: Porcine circovirus 2, synthetic [TaxId:85708]
  • Chain 'J':
    Compound: DNA (5'-d(*tp*ap*gp*tp*ap*tp*tp*ap*cp*c)-3')
    Species: Porcine circovirus 2, synthetic [TaxId:85708]
  • Heterogens: MN, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6wdzA (A:)
pskkngrsgpqphkrwvftlnnpsederkkirdlpislfdyfivgeegneegrtphlqgf
anfvkkqtfnkvkwylgarchiekakgtdqqnkefcskegnllmecgaprsqgqr

    Sequence, based on observed residues (ATOM records):
    >6wdzA (A:)
qphkrwvftlnnpsederkkirdlpislfdyfivgeegneegrtphlqgfanfvkkqtfn
kvkwylgarchiekakgtdqqnkefcskegnllmecgaprs

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6wdzD (D:)
pskkngrsgpqphkrwvftlnnpsederkkirdlpislfdyfivgeegneegrtphlqgf
anfvkkqtfnkvkwylgarchiekakgtdqqnkefcskegnllmecgaprsqgqr

    Sequence, based on observed residues (ATOM records):
    >6wdzD (D:)
pqphkrwvftlnnpsederkkirdlpislfdyfivgeegneegrtphlqgfanfvkkqtf
nkvkwylgarchiekakgtdqqnkefcskegnllmecgaprs

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6wdzG (G:)
pskkngrsgpqphkrwvftlnnpsederkkirdlpislfdyfivgeegneegrtphlqgf
anfvkkqtfnkvkwylgarchiekakgtdqqnkefcskegnllmecgaprsqgqr

    Sequence, based on observed residues (ATOM records):
    >6wdzG (G:)
qphkrwvftlnnpsederkkirdlpislfdyfivgeegegrtphlqgfanfvkkqtfnkv
kwylgarchiekakgtdqqnkefcskegnllmecgaprs

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.