PDB entry 6w9r

View 6w9r on RCSB PDB site
Description: Crystal structure of an OTU deubiquitinase from Wolbachia pipientis wMel bound to ubiquitin
Class: hydrolase
Keywords: Deubiquitinase, Bacterial effector, HYDROLASE
Deposited on 2020-03-23, released 2020-07-01
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-12, with a file datestamp of 2020-08-07.
Experiment type: XRAY
Resolution: 1.82 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q73HU7 (1-End)
      • expression tag (0)
  • Chain 'C':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q73HU7 (1-End)
      • expression tag (0)
  • Chain 'D':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q73HU7 (1-End)
      • expression tag (0)
  • Chain 'K':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: OTU domain-containing protein wMelOTU
    Species: Wolbachia pipientis wMel [TaxId:163164]
    Gene: WD_0443
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q73HU7 (1-End)
      • expression tag (0)
  • Chain 'M':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rm1, d6w9rm2
  • Chain 'N':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rn1, d6w9rn2
  • Chain 'O':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9ro1, d6w9ro2
  • Chain 'P':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rp1, d6w9rp2
  • Chain 'Q':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rq1, d6w9rq2
  • Chain 'R':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rr1, d6w9rr2
  • Chain 'S':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rs1, d6w9rs2
  • Chain 'T':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rt1, d6w9rt2
  • Chain 'U':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9ru1, d6w9ru2
  • Chain 'V':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rv1, d6w9rv2
  • Chain 'W':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rw1, d6w9rw2
  • Chain 'X':
    Compound: Ubiquitin
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0CG48 (2-76)
      • amidation (77)
    Domains in SCOPe 2.08: d6w9rx1, d6w9rx2
  • Heterogens: FLC, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >6w9rM (M:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rM (M:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >6w9rN (N:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rN (N:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >6w9rO (O:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rO (O:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >6w9rP (P:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rP (P:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >6w9rQ (Q:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rQ (Q:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >6w9rR (R:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rR (R:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >6w9rS (S:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rS (S:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >6w9rT (T:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rT (T:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >6w9rU (U:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rU (U:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >6w9rV (V:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rV (V:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >6w9rW (W:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rW (W:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >6w9rX (X:)
gpmqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsd
yniqkestlhlvlrlrgx

    Sequence, based on observed residues (ATOM records): (download) 
    >6w9rX (X:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrgx