PDB entry 6w8s

View 6w8s on RCSB PDB site
Description: crystal structure of metacaspase 4 from arabidopsis
Deposited on 2020-03-21, released 2020-05-20
The last revision was dated 2020-05-20, with a file datestamp of 2020-05-15.
Experiment type: XRAY
Resolution: 3.48 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Metacaspase-4
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AMC4, AMC7, MCP2D, At1g79340, YUP8H12R.4
    Database cross-references and differences (RAF-indexed):
    • Uniprot O64517 (Start-417)
      • expression tag (418-419)
  • Chain 'B':
    Compound: Metacaspase-4
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AMC4, AMC7, MCP2D, At1g79340, YUP8H12R.4
    Database cross-references and differences (RAF-indexed):
    • Uniprot O64517 (Start-417)
      • expression tag (418-419)
  • Chain 'C':
    Compound: Metacaspase-4
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AMC4, AMC7, MCP2D, At1g79340, YUP8H12R.4
    Database cross-references and differences (RAF-indexed):
    • Uniprot O64517 (Start-417)
      • expression tag (418-419)
  • Chain 'D':
    Compound: Metacaspase-4
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: AMC4, AMC7, MCP2D, At1g79340, YUP8H12R.4
    Database cross-references and differences (RAF-indexed):
    • Uniprot O64517 (Start-417)
      • expression tag (418-419)
  • Heterogens: SO4

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6w8sA (A:)
mtkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgk
nirraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfr
dlvdkvppgcrmtiisdschsgglideakeqigestkkeaededeseesssrfgfrkflr
skvegaiesrgfhiggnkkdedeaeeietkeieledgetihakdkslplqtlidilkqqt
gndnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgfle
gklndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkpt
eaygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficve
hhhhhh

    Sequence, based on observed residues (ATOM records):
    >6w8sA (A:)
tkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgkn
irraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfrd
lvdkvppgcrmtiisdschsgglideakeqtkeieledgetihakdkslplqtlidilkq
qtgndnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgf
legklndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagk
pteaygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapfic
ve

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6w8sB (B:)
mtkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgk
nirraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfr
dlvdkvppgcrmtiisdschsgglideakeqigestkkeaededeseesssrfgfrkflr
skvegaiesrgfhiggnkkdedeaeeietkeieledgetihakdkslplqtlidilkqqt
gndnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgfle
gklndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkpt
eaygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficve
hhhhhh

    Sequence, based on observed residues (ATOM records):
    >6w8sB (B:)
tkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgkn
irraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfrd
lvdkvppgcrmtiisdschdeakeqtkeieledgetihakdkslplqtlidilkqqtgnd
nievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgflegkl
ndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkpteay
gamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficve

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6w8sC (C:)
mtkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgk
nirraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfr
dlvdkvppgcrmtiisdschsgglideakeqigestkkeaededeseesssrfgfrkflr
skvegaiesrgfhiggnkkdedeaeeietkeieledgetihakdkslplqtlidilkqqt
gndnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgfle
gklndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkpt
eaygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficve
hhhhhh

    Sequence, based on observed residues (ATOM records):
    >6w8sC (C:)
tkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgkn
irraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfrd
lvdkvppgcrmtiisdschideakeqeietkeieledgetihakdkslplqtlidilkqq
tgndnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgfl
egklndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkp
teaygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficv
e

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6w8sD (D:)
mtkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgk
nirraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfr
dlvdkvppgcrmtiisdschsgglideakeqigestkkeaededeseesssrfgfrkflr
skvegaiesrgfhiggnkkdedeaeeietkeieledgetihakdkslplqtlidilkqqt
gndnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgfle
gklndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkpt
eaygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficve
hhhhhh

    Sequence, based on observed residues (ATOM records):
    >6w8sD (D:)
tkkavliginypgtkaelrgcvndvrrmykclverygfseenitvlidtdesstqptgkn
irraladlvesadsgdvlvvhysghgtrlpaetgedddtgfdecivpcdmnlitdddfrd
lvdkvppgcrmtiisdschideakeqtkeieledgetihakdkslplqtlidilkqqtgn
dnievgkirpslfdafgddsspkvkkfmkvilgklqagngeegglmgmlgklasgflegk
lndedyvkpamqthvgskeevyaggsrgsvplpdsgilisgcqtdqtsadatpagkptea
ygamsnsiqtileetdgeisnremvtrarkalkkqgftqqpglychdgyanapficve