PDB entry 6vzg

View 6vzg on RCSB PDB site
Description: cryo-em structure of sth1-arp7-arp9-rtt102
Deposited on 2020-02-28, released 2020-12-02
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: EM
Resolution: 4.2 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'K':
    Compound: Nuclear protein STH1/NPS1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: STH1, NPS1, YIL126W
    Database cross-references and differences (RAF-indexed):
    • Uniprot P32597
      • conflict (87)
  • Chain 'L':
    Compound: Actin-related protein 7
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: ARP7, SWP61, YPR034W, YP9367.14
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: Actin-like protein ARP9
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Gene: ARP9
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: Regulator of Ty1 transposition protein 102
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: RTT102, YGR275W, G9378
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ATP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6vzgK (K:)
    mgsshhhhhhsqdpnsvrlaeelerqqllekrkkernlhlqkinsiidfikerqseqwsr
    qercfqfgrlgaslhnqmekdeqkriektakqrlaalksndeeaylklldqtkdtritql
    lrqtnsfldslseavraqqneakilhgeevqpitdeerektdyyevahrikekidkqpsi
    lvggtlkeyqlrglewmvslynnhlngilademglgktiqsislitylyevkkdigpflv
    ivplstitnwtlefekwapslntiiykgtpnqrhslqhqirvgnfdvllttyeyiikdks
    llskhdwahmiideghrmknaqsklsftishyyrtrnrliltgtplqnnlpelwallnfv
    lpkifnsaktfedwfntpfantgtqeklelteeetlliirrlhkvlrpfllrrlkkevek
    dlpdkvekvikcklsglqqqlyqqmlkhnalfvgagtegatkggikglnnkimqlrkicn
    hpfvfdevegvvnpsrgnsdllfrvagkfelldrvlpkfkasghrvlmffqmtqvmdime
    dflrmkdlkymrldgstkteertemlnafnapdsdyfcfllstragglglnlqtadtvii
    fdtdwnphqdlqaqdrahrigqknevrilrlittdsveevileramqkldidgkviqagk
    fdnkstaeeqeaflrrliesetnrddddkaeldddelndtlarsadekilfdkidkermn
    qeradakaqglrvppprliqldelpkvfredieehfkkedseplgrirqkkrvyyddglt
    eeqfleaveddnmsledaikkrrearerrrlrq
    

    Sequence, based on observed residues (ATOM records):
    >6vzgK (K:)
    rkkernlhlqkinsiidfikerqseqwsrqercfqfgrlgaslhnqmekdeqkriektak
    qr
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6vzgL (L:)
    mtlnrkcvvihngshrtvagfsnvelpqciipssyikrtdeggeaefifgtynmidaaae
    krngdevytlvdsqglpynwdalemqwrylydtqlkvspeelplvitmpatngkpdmail
    eryyelafdklnvpvfqivieplaialsmgkssafvidigasgcnvtpiidgivvknavv
    rskfggdfldfqvherlaplikeendmenmadeqkrstdvwyeastwiqqfkstmlqvse
    kdlfeleryykeqadiyakqqeqlkqmdqqlqytaltgspnnplvqkknflfkplnktlt
    ldlkecyqfaeylfkpqlisdkfspedglgplmaksvkkagasinsmkantstnpnglgt
    shintnvgdnnstasssnispeqvysllltnviitgstsliegmeqriikelsirfpqyk
    lttfanqvmmdrkiqgwlgaltmanlpswslgkwyskedyetlkrdrkqsqatnatn
    

    Sequence, based on observed residues (ATOM records):
    >6vzgL (L:)
    tlnrkcvvihngshrtvagfsnvelpqciipssyikrteaefifgtynmidaaaekrngd
    evytlvdsqglpynwdalemqwrylydtqlkvspeelplvitmpatngkpdmaileryye
    lafdklnvpvfqivieplaialsmgkssafvidigasgcnvtpiidgivvknavvrskfg
    gdfldfqvherlaplikeeqkrstdvwyeastwiqqfkstmlqvsekdlfeleryykeqa
    dinnplvqkknflfkplnktltldlkecyqfaeylfkpqlisdkfspedglgplmaksvk
    kagasispeqvysllltnviitgstsliegmeqriikelsirfpqyklttfanqvmmdrk
    iqgwlgaltmanlpswslgkwyskedyetlkrd
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6vzgM (M:)
    mapfrqdsiliiyprsqttlvqfglneetftvpeleiptqiyrttrqdgsytyhstnkdn
    kaelikpiqngeiidisaftqflrlifvsilsdranknqdafeaelsniplllithhsws
    qsdleiitqyvfesleinnliqlpaslaatysmislqncciidvgthhtdiipivdyaql
    dhlvssipmggqsindslkkllpqwdddqieslkkspifevlsddakklssfdfgnened
    edegtlnvaeiitsgrdtrevleerergqkvknvknsdlefntfwdekgneikvgkqrfq
    gcnnliknisnrvgltldniddinkakavweniiivggttsisgfkeallgqllkdhlii
    epeeekskreeeaksvlpaatkkkskfmtnstafvptieyvqcptviklakypdyfpewk
    ksgyseiiflgaqivskqifthpkdtfyitrekynmkgpaalwdvqf
    

    Sequence, based on observed residues (ATOM records):
    >6vzgM (M:)
    pfrqdsiliiyprsqttlvqfglneetftvpeleiptqiyrttrqdgsytyhstnkdnka
    elikpiqngeiidisaftqflrlifvsilsdranknqdafeaelsniplllithhswsqs
    dleiitqyvfesleinnliqlpaslaatysmislqncciidvgthhtdiipivdyaqldh
    lvssipmggqsindslkkllpqwdddqieslkkspifevlsknsdlefntfwdekgneik
    vgkqrfqgcnnliknisnrvgltldniddinkakavweniiivggttsisgfkeallgql
    lkdhliiepeeekskreeeaksfvptieyvqcptviklakypdyfpewkksgyseiiflg
    aqivskqifthpkdtfyitrekynmkgpaalwdvqf
    

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6vzgN (N:)
    mdpqtlitkankvsyygnptskeswrydwyqpskvssnvqqpqqqlgdmennlekypfry
    ktwlrnqedeknlqrescedildlkefdrrilkkslmtshtkgdtskatgapsanqgdea
    lsvddirgavgnseaipglsagvnndntkeskdvkmn
    

    Sequence, based on observed residues (ATOM records):
    >6vzgN (N:)
    mdpqtlitkankkeswrydwyqpskekypfryktwlrnqeescedildlkefdrr