PDB entry 6vy6

View 6vy6 on RCSB PDB site
Description: Crystal structure of Hendra receptor binding protein head domain in complex with human neutralizing antibody HENV-26
Class: viral protein/immune system
Keywords: henipavirus, Hendra virus, receptor binding protein, antibody, antibody-antigen complex, VIRAL PROTEIN-IMMUNE SYSTEM complex
Deposited on 2020-02-25, released 2021-01-06
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-06, with a file datestamp of 2021-01-01.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: receptor binding protein
    Species: Hendra henipavirus [TaxId:63330]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Anti-Hendra receptor binding protein antibody HENV-26 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VY6 (0-229)
    Domains in SCOPe 2.08: d6vy6h_
  • Chain 'L':
    Compound: Anti-Hendra receptor binding protein antibody HENV-26 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VY6 (0-End)
    Domains in SCOPe 2.08: d6vy6l1, d6vy6l2
  • Heterogens: SO4, MPD, NAG, CL, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6vy6H (H:)
evqllesgggliqpggslrlscaasgftfsrftmswvrqppgkgpewvsgisgsgghtyy
adsvkgrftisrdnskntlylqmnslkaedtavyycakdgfvgqqlmrrgpwwfdpwgqg
tlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

    Sequence, based on observed residues (ATOM records): (download) 
    >6vy6H (H:)
evqllesgggliqpggslrlscaasgftfsrftmswvrqppgkgpewvsgisgsgghtyy
adsvkgrftisrdnskntlylqmnslkaedtavyycakdgfvgqqlmrrgpwwfdpwgqg
tlvtvssastkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavl
qssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6vy6L (L:)
syvltqppsvsvapgqtariscggnnignkgvhwyqqkpgqapvvvvyddsdrpsgiper
fsgsnsgntatltisrveagdeadyycqvwdsssdhvvfgggtkltvlgqpkanptvtlf
ppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvaptecs

    Sequence, based on observed residues (ATOM records): (download) 
    >6vy6L (L:)
syvltqppsvsvapgqtariscggnnignkgvhwyqqkpgqapvvvvyddsdrpsgiper
fsgsnsgntatltisrveagdeadyycqvwdsssdhvvfgggtkltvlgqpkanptvtlf
ppsseelqankatlvclisdfypgavtvawkadgspvkagvettkpskqsnnkyaassyl
sltpeqwkshrsyscqvthegstvektvapte