PDB entry 6vy1

View 6vy1 on RCSB PDB site
Description: cryo-em structure of filamentous pfd from methanocaldococcus jannaschii
Deposited on 2020-02-25, released 2020-05-13
The last revision was dated 2020-07-08, with a file datestamp of 2020-07-03.
Experiment type: EM
Resolution: 6 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'c':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: Prefoldin subunit alpha 2
    Species: Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) [TaxId:243232]
    Gene: pfdA2, MJ0648
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vy1A (A:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1A (A:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vy1B (B:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1B (B:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vy1C (C:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1C (C:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vy1D (D:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1D (D:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vy1E (E:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1E (E:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vy1F (F:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1F (F:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vy1G (G:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1G (G:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6vy1a (a:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1a (a:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6vy1b (b:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1b (b:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'c':
    Sequence, based on SEQRES records:
    >6vy1c (c:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1c (c:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6vy1d (d:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1d (d:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'e':
    Sequence, based on SEQRES records:
    >6vy1e (e:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1e (e:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'f':
    Sequence, based on SEQRES records:
    >6vy1f (f:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1f (f:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a

  • Chain 'g':
    Sequence, based on SEQRES records:
    >6vy1g (g:)
mvnevidineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvg
siaqvemkvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyak
iedliaeaqqtseeekaeeeeneekae

    Sequence, based on observed residues (ATOM records):
    >6vy1g (g:)
ineavrayiaqieglraeigrldatiatlrqslatlkslktlgegktvlvpvgsiaqvem
kvekmdkvvvsvgqnisaeleyeealkyiedeikklltfrlvleqaiaelyakiedliae
a