PDB entry 6vxx

View 6vxx on RCSB PDB site
Description: structure of the sars-cov-2 spike glycoprotein (closed state)
Deposited on 2020-02-25, released 2020-03-11
The last revision was dated 2021-01-27, with a file datestamp of 2021-01-22.
Experiment type: EM
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • conflict (1004-1005)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • conflict (1004-1005)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • conflict (1004-1005)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vxxA (A:)
mgilpspgmpallslvsllsvllmgcvaetgtqcvnlttrtqlppaytnsftrgvyypdk
vfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksnii
rgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvys
sannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfs
aleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkyne
ngtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgev
fnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfv
irgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnl
kpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhap
atvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqt
leilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsn
vfqtragcligaehvnnsyecdipigagicasyqtqtnspsgagsvasqsiiaytmslga
ensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfct
qlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedl
lfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagt
itsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsst
asalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrl
qslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvv
flhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntf
vsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqk
eidrlnevaknlneslidlqelgkyeqyikgsgrenlyfqggggsgyipeaprdgqayvr
kdgewvllstflghhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6vxxA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtkfngltvlpplltdemiaqytsallagtitsgwtfgagaalq
ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpelds

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vxxB (B:)
mgilpspgmpallslvsllsvllmgcvaetgtqcvnlttrtqlppaytnsftrgvyypdk
vfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksnii
rgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvys
sannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfs
aleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkyne
ngtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgev
fnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfv
irgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnl
kpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhap
atvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqt
leilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsn
vfqtragcligaehvnnsyecdipigagicasyqtqtnspsgagsvasqsiiaytmslga
ensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfct
qlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedl
lfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagt
itsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsst
asalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrl
qslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvv
flhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntf
vsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqk
eidrlnevaknlneslidlqelgkyeqyikgsgrenlyfqggggsgyipeaprdgqayvr
kdgewvllstflghhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6vxxB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtkfngltvlpplltdemiaqytsallagtitsgwtfgagaalq
ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpelds

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vxxC (C:)
mgilpspgmpallslvsllsvllmgcvaetgtqcvnlttrtqlppaytnsftrgvyypdk
vfrssvlhstqdlflpffsnvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksnii
rgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvyyhknnkswmesefrvys
sannctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfs
aleplvdlpiginitrfqtllalhrsyltpgdsssgwtagaaayyvgylqprtfllkyne
ngtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgev
fnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfv
irgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnl
kpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhap
atvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqt
leilditpcsfggvsvitpgtntsnqvavlyqdvnctevpvaihadqltptwrvystgsn
vfqtragcligaehvnnsyecdipigagicasyqtqtnspsgagsvasqsiiaytmslga
ensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfct
qlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedl
lfnkvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagt
itsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsst
asalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrl
qslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvv
flhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntf
vsgncdvvigivnntvydplqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqk
eidrlnevaknlneslidlqelgkyeqyikgsgrenlyfqggggsgyipeaprdgqayvr
kdgewvllstflghhhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6vxxC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsfknlr
efvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhaayyv
gylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesiv
rfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptkl
ndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskgny
nylyrkpferdiyfplqsygfqptnvgyqpyrvvvlsfellhapatvcgpkkstnlvknk
cvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsv
itpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqts
qsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstec
snlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdp
skpskrsfiedllfnkvtkfngltvlpplltdemiaqytsallagtitsgwtfgagaalq
ipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqn
aqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqlira
aeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknf
ttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnn
tvydplqpelds