PDB entry 6vtf

View 6vtf on RCSB PDB site
Description: naegleria gruberi rna ligase with ppi
Deposited on 2020-02-12, released 2020-04-08
The last revision was dated 2020-06-10, with a file datestamp of 2020-06-05.
Experiment type: XRAY
Resolution: 2.71 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA ligase
    Species: Naegleria gruberi [TaxId:5762]
    Gene: NAEGRDRAFT_82186
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RNA ligase
    Species: Naegleria gruberi [TaxId:5762]
    Gene: NAEGRDRAFT_82186
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: RNA ligase
    Species: Naegleria gruberi [TaxId:5762]
    Gene: NAEGRDRAFT_82186
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RNA ligase
    Species: Naegleria gruberi [TaxId:5762]
    Gene: NAEGRDRAFT_82186
    Database cross-references and differences (RAF-indexed):
  • Heterogens: POP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vtfA (A:)
smgvrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfiked
ndrypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgi
tkweppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvy
rkddhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnlek
lkgqdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilam
adgpslnknvkreglvfkrldgkfsfkaisnaylekhkdr

    Sequence, based on observed residues (ATOM records):
    >6vtfA (A:)
vrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfikedndr
ypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgitkw
eppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvyrkd
dhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnleklkg
qdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilamadg
pslnknvkreglvfkrldgkfsfkaisnaylekhkdr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vtfB (B:)
smgvrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfiked
ndrypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgi
tkweppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvy
rkddhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnlek
lkgqdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilam
adgpslnknvkreglvfkrldgkfsfkaisnaylekhkdr

    Sequence, based on observed residues (ATOM records):
    >6vtfB (B:)
vrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfikedndr
ypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgitkw
eppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvyrkd
dhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnleklkg
qdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilamadg
pslnknvkreglvfkrldgkfsfkaisnaylekhkdr

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vtfC (C:)
smgvrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfiked
ndrypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgi
tkweppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvy
rkddhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnlek
lkgqdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilam
adgpslnknvkreglvfkrldgkfsfkaisnaylekhkdr

    Sequence, based on observed residues (ATOM records):
    >6vtfC (C:)
vrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfikedndr
ypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgitkw
eppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvyrkd
dhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnleklkg
qdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilamadg
pslnknvkreglvfkrldgkfsfkaisnaylekhkdr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vtfD (D:)
smgvrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfiked
ndrypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgi
tkweppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvy
rkddhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnlek
lkgqdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilam
adgpslnknvkreglvfkrldgkfsfkaisnaylekhkdr

    Sequence, based on observed residues (ATOM records):
    >6vtfD (D:)
vrklatirtageitpiagaeaiecchvdgwtcvikkgefkqgdrgvyfeidsfikedndr
ypmlskqvidyegqrgtrlrtarlrgqlsqglflpmdrfpelasnqvgddvteilgitkw
eppistnlsgeilgefptfisktdqervqnlipqieenkgqkfevtvkldgssmtvyrkd
dhigvcgrnwelretatnaqwhaarrnkmieglqflnrnlalqgeiigesiqgnleklkg
qdfylfdiydidkaqyltpierqslvkqlndngftvkhvpilddlelnhtaeqilamadg
pslnknvkreglvfkrldgkfsfkaisnaylekhkdr