PDB entry 6vsa

View 6vsa on RCSB PDB site
Description: Single particle reconstruction of HemQ from Geobacillus based on data acquired in the presence of substantial aberrations
Class: oxidoreductase
Keywords: oxidoreductase, heme-binding
Deposited on 2020-02-10, released 2020-02-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-05-13, with a file datestamp of 2020-05-08.
Experiment type: EM
Resolution: 2.32 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'V':
    Compound: HemQ
    Species: Geobacillus sp. (strain Y412MC52) [TaxId:550542]
    Gene: GYMC52_3505
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vsav_
  • Chain 'W':
    Compound: HemQ
    Species: Geobacillus sp. (strain Y412MC52) [TaxId:550542]
    Gene: GYMC52_3505
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vsaw_
  • Chain 'X':
    Compound: HemQ
    Species: Geobacillus sp. (strain Y412MC52) [TaxId:550542]
    Gene: GYMC52_3505
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vsax_
  • Chain 'Y':
    Compound: HemQ
    Species: Geobacillus sp. (strain Y412MC52) [TaxId:550542]
    Gene: GYMC52_3505
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vsay_
  • Chain 'Z':
    Compound: HemQ
    Species: Geobacillus sp. (strain Y412MC52) [TaxId:550542]
    Gene: GYMC52_3505
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6vsaz_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >6vsaV (V:)
mseaaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshav
ytivgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelsnylasgsed
pyqipevrrrlypilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyag
kvtqiitgsvglddfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpme
nvssffhv

    Sequence, based on observed residues (ATOM records): (download) 
    >6vsaV (V:)
aaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshavyti
vgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelpyqipevrrrlyp
ilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyagkvtqiitgsvgld
dfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpmenvssffhv

  • Chain 'W':
    Sequence, based on SEQRES records: (download) 
    >6vsaW (W:)
mseaaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshav
ytivgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelsnylasgsed
pyqipevrrrlypilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyag
kvtqiitgsvglddfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpme
nvssffhv

    Sequence, based on observed residues (ATOM records): (download) 
    >6vsaW (W:)
aaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshavyti
vgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelpyqipevrrrlyp
ilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyagkvtqiitgsvgld
dfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpmenvssffhv

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >6vsaX (X:)
mseaaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshav
ytivgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelsnylasgsed
pyqipevrrrlypilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyag
kvtqiitgsvglddfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpme
nvssffhv

    Sequence, based on observed residues (ATOM records): (download) 
    >6vsaX (X:)
aaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshavyti
vgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelpyqipevrrrlyp
ilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyagkvtqiitgsvgld
dfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpmenvssffhv

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >6vsaY (Y:)
mseaaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshav
ytivgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelsnylasgsed
pyqipevrrrlypilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyag
kvtqiitgsvglddfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpme
nvssffhv

    Sequence, based on observed residues (ATOM records): (download) 
    >6vsaY (Y:)
aaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshavyti
vgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelpyqipevrrrlyp
ilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyagkvtqiitgsvgld
dfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpmenvssffhv

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >6vsaZ (Z:)
mseaaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshav
ytivgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelsnylasgsed
pyqipevrrrlypilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyag
kvtqiitgsvglddfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpme
nvssffhv

    Sequence, based on observed residues (ATOM records): (download) 
    >6vsaZ (Z:)
aaqtldgwyclhdfrtidwsawktlpneereaaiseflalvdqwettesekqgshavyti
vgqkadilfmilrptldelheietalnktkladyllpaysyvsvvelpyqipevrrrlyp
ilpktnyicfypmdkrrqgndnwymlsmeqrrelmrahgmtgrkyagkvtqiitgsvgld
dfewgvtlfsddalqfkklvyemrfdevsarfgefgsffvgtrlpmenvssffhv