PDB entry 6vrq

View 6vrq on RCSB PDB site
Description: Crystal structure of gl12A21 Fab in complex with anti-idiotypic iv12 Fab
Class: immune system
Keywords: Fab, Complex, gl12A21, IMMUNE SYSTEM, HIV, CD4-binding site, iv12
Deposited on 2020-02-08, released 2021-02-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: XRAY
Resolution: 2.57 Å
R-factor: N/A
AEROSPACI score: 0.28 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: gl12A21 Fab Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VRQ (0-End)
  • Chain 'B':
    Compound: gl12A21 Fab Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VRQ (0-End)
    Domains in SCOPe 2.08: d6vrqb1, d6vrqb2
  • Chain 'H':
    Compound: iv12 Fab Heavy Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VRQ (0-End)
    Domains in SCOPe 2.08: d6vrqh1, d6vrqh2
  • Chain 'L':
    Compound: iv12 Fab Light Chain
    Species: Mus musculus [TaxId:10090]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VRQ (0-End)
    Domains in SCOPe 2.08: d6vrql1, d6vrql2
  • Heterogens: EDO, PEG, K, CL, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6vrqB (B:)
diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
rfsgsgsgtdftftisslqpediatyycavleffgpgtkvdikrtvaapsvfifppsdeq
lksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlska
dyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6vrqB (B:)
diqmtqspsslsasvgdrvtitcqasqdisnylnwyqqkpgkapklliydasnletgvps
rfsgsgsgtdftftisslqpediatyycavleffgpgtkvdikrtvaapsvfifppsdeq
lksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltlska
dyekhkvyacevthqglsspvtksfnr

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6vrqH (H:)
qvqlqqsgaelarpgasvklpckasgytftnygliwvkqrsgqglewigeiyprsgntyy
nekfkgkatltadkssstaymelrslasedsavyfcakkfmptgffdywgqgttltvssa
stkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssg
lyslssvvtvpssslgtqtyicnvnhkpsntkvdkrvepkscdk

    Sequence, based on observed residues (ATOM records): (download) 
    >6vrqH (H:)
qvqlqqsgaelarpgasvklpckasgytftnygliwvkqrsgqglewigeiyprsgntyy
nekfkgkatltadkssstaymelrslasedsavyfcakkfmptgffdywgqgttltvssa
stkgpsvfplapssggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkrvep

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6vrqL (L:)
divmtqshksmstsigdrvsitckasqdvsiavawyqqnpgqspkllifsasyrytgvpd
rftgsgsgtdftititsvqaedlavyycqqhhsnpltfgagtklelkrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6vrqL (L:)
divmtqshksmstsigdrvsitckasqdvsiavawyqqnpgqspkllifsasyrytgvpd
rftgsgsgtdftititsvqaedlavyycqqhhsnpltfgagtklelkrtvaapsvfifpp
sdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstlt
lskadyekhkvyacevthqglsspvtksfnrg