PDB entry 6vqi

View 6vqi on RCSB PDB site
Description: mammalian v-atpase from rat brain collar and peripheral stalks rotational state 1 (from focused refinement)
Deposited on 2020-02-05, released 2020-03-18
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 4.3 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'G':
    Compound: V-type proton ATPase subunit C 1
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: V-type proton ATPase subunit E 1
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: V-type proton ATPase subunit E 1
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: V-type proton ATPase subunit E 1
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: V-type proton ATPase subunit G
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: V-type proton ATPase subunit G
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: V-type proton ATPase subunit G
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: V-type proton ATPase 116 kDa subunit a isoform 1
    Species: Rattus norvegicus [TaxId:10116]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vqiG (G:)
mtefwlisapgektcqqtweklhaattknnnlavsskfnipdlkvgtldvlvglsdelak
ldafvegvvkkvaqymadvledskdkvqenllasgvdlvtyitrfqwdmakypikqslkn
iseiiakgvtqidndlksrasaynnlkgnlqnlerknagslltrslaeivkkddfvldse
ylvtllvvvpklnhndwikqyetlaemvvprssnvlsedqdsylcnvtlfkkavddfrhk
arenkfivrdfqyneeemradkeemnrlstdkkkqfgplvrwlkvnfseafiawihikal
rvfvesvlryglpvnfqamllqpnkksvkklrevlhelykhldssaaaiidapmdipgln
lsqqeyypyvyykidcnllefk

    Sequence, based on observed residues (ATOM records):
    >6vqiG (G:)
tefwlisapgektcqqtweklhaattknnnlavsskfnipdlkvgtldvlvglsdelakl
dafvegvvkkvaqymadvledskdkvqenllasgvdlvtyitrfqwdmakypikqslkni
seiiakgvtqidndlksrasaynnlkgnlqnlerknagslltrslaeivkkddfvldsey
lvtllvvvpklnhndwikqyetlaemvvprssnvlsedqdsylcnvtlfkkavddfrhka
renkfivrdfqyneeemradkeemnrlstdkkkqfgplvrwlkvnfseafiawihikalr
vfvesvlryglpvnfqamllqpnkksvkklrevlhelykhldssaaqqeyypyvyykidc

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6vqiI (I:)
malsdadvqkqikhmmafieqeanekaeeidakaeeefniekgrlvqtqrlkimeyyekk
ekqieqqkkiqmsnlmnqarlkvlrarddlitdllneakqrlskvvkdttryqvlldglv
lqglyqlleprmivrcrkqdfplvkaavqkaipmykiatkkdvdvqidleaylpediagg
veiyngdrkikvsntlesrldliaqqmmpevrgalfgananrkfld

    Sequence, based on observed residues (ATOM records):
    >6vqiI (I:)
alsdadvqkqikhmmafieqeanekaeeidakaeeefniekgrlvqtqrlkimeyyekke
kqie

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6vqiJ (J:)
malsdadvqkqikhmmafieqeanekaeeidakaeeefniekgrlvqtqrlkimeyyekk
ekqieqqkkiqmsnlmnqarlkvlrarddlitdllneakqrlskvvkdttryqvlldglv
lqglyqlleprmivrcrkqdfplvkaavqkaipmykiatkkdvdvqidleaylpediagg
veiyngdrkikvsntlesrldliaqqmmpevrgalfgananrkfld

    Sequence, based on observed residues (ATOM records):
    >6vqiJ (J:)
alsdadvqkqikhmmafieqeanekaeeidakaeeefniekgrlvqtqrlkimeyyekke
kqie

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6vqiK (K:)
malsdadvqkqikhmmafieqeanekaeeidakaeeefniekgrlvqtqrlkimeyyekk
ekqieqqkkiqmsnlmnqarlkvlrarddlitdllneakqrlskvvkdttryqvlldglv
lqglyqlleprmivrcrkqdfplvkaavqkaipmykiatkkdvdvqidleaylpediagg
veiyngdrkikvsntlesrldliaqqmmpevrgalfgananrkfld

    Sequence, based on observed residues (ATOM records):
    >6vqiK (K:)
alsdadvqkqikhmmafieqeanekaeeidakaeeefniekgrlvqtqrlkimeyyekke
kqie

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6vqiM (M:)
masqsqgiqqllqaekraaekvadarkrkarrlkqakeeaqmeveqyrrereqefqskqq
aamgsqgnlsaeveqatrrqvqgmqssqqrnrervltqllgmvcdvrpqvhpnyritv

    Sequence, based on observed residues (ATOM records):
    >6vqiM (M:)
sqsqgiqqllqaekraaekvadarkrkarrlkqakeeaqmeveqyrrereqefqskqqaa
mgsqgnl

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6vqiN (N:)
masqsqgiqqllqaekraaekvadarkrkarrlkqakeeaqmeveqyrrereqefqskqq
aamgsqgnlsaeveqatrrqvqgmqssqqrnrervltqllgmvcdvrpqvhpnyritv

    Sequence, based on observed residues (ATOM records):
    >6vqiN (N:)
sqsqgiqqllqaekraaekvadarkrkarrlkqakeeaqmeveqyrrereqefqskqqaa
mgsqgnl

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6vqiO (O:)
masqsqgiqqllqaekraaekvadarkrkarrlkqakeeaqmeveqyrrereqefqskqq
aamgsqgnlsaeveqatrrqvqgmqssqqrnrervltqllgmvcdvrpqvhpnyritv

    Sequence, based on observed residues (ATOM records):
    >6vqiO (O:)
sqsqgiqqllqaekraaekvadarkrkarrlkqakeeaqmeveqyrrereqefqskqqaa
mgsqgnl

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6vqia (a:)
mgelfrseemtlaqlflqseaayccvseleelgkvqfrdlnpdvnvfqrkfvnevrrcee
mdrklrfvekeirkanipimdtgenpevpfprdmidleanfekienelkeintnqealkr
nfleltelkfilrktqqffdemadpdlleesssllepnemgrgaplrlgfvagvinreri
ptfermlwrvcrgnvflrqaeienpledpvtgdyvhksvfiiffqgdqlknrvkkicegf
raslypcpetpqerkemasgvntriddlqmvlnqtedhrqrvlqaaaknirvwfikvrkm
kaiyhtlnlcnidvtqkcliaevwcpvtdldsiqfalrrgtehsgstvpsilnrmqtnqt
pptynktnkfthgfqnivdaygigtyreinpapytvitfpflfavmfgdfghgilmtlfa
vwmvlresrilsqknenemfsmvfsgryiillmglfsiytgliyndcfskslnifgssws
vrpmftignwteetllgssvlqlnpaipgvfggpypfgidpiwniatnkltflnsfkmkm
svilgiihmlfgvslslfnhiyfkkplniyfgfipeiifmsslfgylvilifykwtayda
hssrnapsllihfinmflfsypesgnamlysgqkgiqcflivvamlcvpwmllfkplilr
hqylrkkhlgtlnfggirvgngpteedaeiiqhdqlsthsedaeeptedevfdfgdtmvh
qaihtieyclgcisntasylrlwalslahaqlsevlwtmvihiglhvrslagglglffif
aafatltvaillimeglsaflhalrlhwvefqnkfytgtgfkflpfsfehiregkfde

    Sequence, based on observed residues (ATOM records):
    >6vqia (a:)
laqlflqseaayccvseleelgkvqfrdlnpdvnvfqrkfvnevrrceemdrklrfveke
irkanipimdtgenpevpfprdmidleanfekienelkeintnqealkrnfleltelkfi
lfvagvinreriptfermlwrvcrgnvflrqaeienpledpvtgdyvhksvfiiffqgdq
lknrvkkicegfraslypcpetpqerkemasgvntriddlqmvlnqtedhrqrvlqaaak
nirvwfikvrkmkaiyhtlnlcnidvtqkcliaevwcpvtdldsiqfalrrgtehsgstv
psilnrmqt