PDB entry 6vo1

View 6vo1 on RCSB PDB site
Description: bg505 sosip.v5.2 in complex with rhesus macaque fab rm20j
Deposited on 2020-01-29, released 2020-07-01
The last revision was dated 2020-09-16, with a file datestamp of 2020-09-11.
Experiment type: EM
Resolution: 3.88 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: envelope glycoprotein gp120
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (33)
      • conflict (42)
      • conflict (283)
      • conflict (300)
      • conflict (468)
  • Chain 'B':
    Compound: envelope glycoprotein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (47)
      • conflict (49)
      • conflict (93)
  • Chain 'C':
    Compound: envelope glycoprotein gp120
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (33)
      • conflict (42)
      • conflict (283)
      • conflict (300)
      • conflict (468)
  • Chain 'D':
    Compound: envelope glycoprotein gp120
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (33)
      • conflict (42)
      • conflict (283)
      • conflict (300)
      • conflict (468)
  • Chain 'E':
    Compound: envelope glycoprotein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (47)
      • conflict (49)
      • conflict (93)
  • Chain 'F':
    Compound: envelope glycoprotein gp41
    Species: HUMAN IMMUNODEFICIENCY VIRUS 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (47)
      • conflict (49)
      • conflict (93)
  • Chain 'G':
    Compound: RM20J Heavy chain Fab
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VO1 (0-117)
  • Chain 'H':
    Compound: RM20J Heavy chain Fab
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VO1 (0-117)
  • Chain 'I':
    Compound: RM20J Heavy chain Fab
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VO1 (0-117)
  • Chain 'J':
    Compound: RM20J Kappa light chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VO1 (0-106)
  • Chain 'K':
    Compound: RM20J Kappa light chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VO1 (0-106)
  • Chain 'L':
    Compound: RM20J Kappa light chain
    Species: Macaca mulatta [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VO1 (0-106)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vo1A (A:)
aenlwvtvyygvpvwkdaettlfcasdakayetkkhnvwathccvptdpnpqeihlenvt
eefnmwknnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncs
fnmttelrdkkqkvyslfyrldvvqinenqgnrsnnsnkeyrlincntsaitqacpkvsf
epipihycapagfailkckdkkfngtgpcpsvstvqcthgikpvvstqlllngslaeeev
mirsenitnnaknilvqfntpvqinctrpnnntrksirigpgqwfyatgdiigdirqahc
nvskatwnetlgkvvkqlrkhfgnntiirfanssggdlevtthsfncggeffycntsglf
nstwisntsvqgsnstgsndsitlpcrikqiinmwqrigqamyappiqgvircvsnitgl
iltrdggstnsttetfrpgggdmrdnwrselykykvvkieplgvaptrckrrvvg

    Sequence, based on observed residues (ATOM records):
    >6vo1A (A:)
nlwvtvyygvpvwkdaettlfcaskkhnvwathccvptdpnpqeihlenvteefnmwknn
mveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttelrd
kkqkvyslfyrldvvqineyrlincntsaitqacpkvsfepipihycapagfailkckdk
kfngtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntp
vqinctrpnnntrksirigpgqwfyatgdiigdirqahcnvskatwnetlgkvvkqlrkh
fgnntiirfanssggdlevtthsfncggeffycntsglfnstwisntsdsitlpcrikqi
inmwqrigqamyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrsel
ykykvvkieplgvaptrckr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vo1B (B:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapecqqhllkltvw
gikqlqarvlaverylrdqqllgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqw
dkeisnytqiiyglleesqnqqekneqdllald

    Sequence, based on observed residues (ATOM records):
    >6vo1B (B:)
gflgaagstmgaasmtltvqarnllspecqqhllkltvwgikqlqarvlaverylrdqql
lgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnq
qekneqdll

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vo1C (C:)
aenlwvtvyygvpvwkdaettlfcasdakayetkkhnvwathccvptdpnpqeihlenvt
eefnmwknnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncs
fnmttelrdkkqkvyslfyrldvvqinenqgnrsnnsnkeyrlincntsaitqacpkvsf
epipihycapagfailkckdkkfngtgpcpsvstvqcthgikpvvstqlllngslaeeev
mirsenitnnaknilvqfntpvqinctrpnnntrksirigpgqwfyatgdiigdirqahc
nvskatwnetlgkvvkqlrkhfgnntiirfanssggdlevtthsfncggeffycntsglf
nstwisntsvqgsnstgsndsitlpcrikqiinmwqrigqamyappiqgvircvsnitgl
iltrdggstnsttetfrpgggdmrdnwrselykykvvkieplgvaptrckrrvvg

    Sequence, based on observed residues (ATOM records):
    >6vo1C (C:)
nlwvtvyygvpvwkdaettlfcaskkhnvwathccvptdpnpqeihlenvteefnmwknn
mveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttelrd
kkqkvyslfyrldvvqineyrlincntsaitqacpkvsfepipihycapagfailkckdk
kfngtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntp
vqinctrpnnntrksirigpgqwfyatgdiigdirqahcnvskatwnetlgkvvkqlrkh
fgnntiirfanssggdlevtthsfncggeffycntsglfnstwisntsdsitlpcrikqi
inmwqrigqamyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrsel
ykykvvkieplgvaptrckr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vo1D (D:)
aenlwvtvyygvpvwkdaettlfcasdakayetkkhnvwathccvptdpnpqeihlenvt
eefnmwknnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncs
fnmttelrdkkqkvyslfyrldvvqinenqgnrsnnsnkeyrlincntsaitqacpkvsf
epipihycapagfailkckdkkfngtgpcpsvstvqcthgikpvvstqlllngslaeeev
mirsenitnnaknilvqfntpvqinctrpnnntrksirigpgqwfyatgdiigdirqahc
nvskatwnetlgkvvkqlrkhfgnntiirfanssggdlevtthsfncggeffycntsglf
nstwisntsvqgsnstgsndsitlpcrikqiinmwqrigqamyappiqgvircvsnitgl
iltrdggstnsttetfrpgggdmrdnwrselykykvvkieplgvaptrckrrvvg

    Sequence, based on observed residues (ATOM records):
    >6vo1D (D:)
nlwvtvyygvpvwkdaettlfcaskkhnvwathccvptdpnpqeihlenvteefnmwknn
mveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttelrd
kkqkvyslfyrldvvqineyrlincntsaitqacpkvsfepipihycapagfailkckdk
kfngtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntp
vqinctrpnnntrksirigpgqwfyatgdiigdirqahcnvskatwnetlgkvvkqlrkh
fgnntiirfanssggdlevtthsfncggeffycntsglfnstwisntsdsitlpcrikqi
inmwqrigqamyappiqgvircvsnitgliltrdggstnsttetfrpgggdmrdnwrsel
ykykvvkieplgvaptrckr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vo1E (E:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapecqqhllkltvw
gikqlqarvlaverylrdqqllgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqw
dkeisnytqiiyglleesqnqqekneqdllald

    Sequence, based on observed residues (ATOM records):
    >6vo1E (E:)
gflgaagstmgaasmtltvqarnllspecqqhllkltvwgikqlqarvlaverylrdqql
lgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnq
qekneqdll

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vo1F (F:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapecqqhllkltvw
gikqlqarvlaverylrdqqllgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqw
dkeisnytqiiyglleesqnqqekneqdllald

    Sequence, based on observed residues (ATOM records):
    >6vo1F (F:)
gflgaagstmgaasmtltvqarnllspecqqhllkltvwgikqlqarvlaverylrdqql
lgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnq
qekneqdll

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6vo1G (G:)
qvqlqesgpavvqpsetlsltcavsggsisggygwtwirqapgkalewigniyghsgstn
yksslkrrltistdtsknqfslkltsvtaadtavyycarwstadfdywgqgvlvtvss

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6vo1H (H:)
qvqlqesgpavvqpsetlsltcavsggsisggygwtwirqapgkalewigniyghsgstn
yksslkrrltistdtsknqfslkltsvtaadtavyycarwstadfdywgqgvlvtvss

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6vo1I (I:)
qvqlqesgpavvqpsetlsltcavsggsisggygwtwirqapgkalewigniyghsgstn
yksslkrrltistdtsknqfslkltsvtaadtavyycarwstadfdywgqgvlvtvss

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6vo1J (J:)
divmtqspsslsasvgdtvtitcrasqditndlawyqqkpgkapkaliyyasnlesgvps
rfsgsgagtdftltisslqpedfalyycqqhnnypltfgpgtkvdik

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6vo1K (K:)
divmtqspsslsasvgdtvtitcrasqditndlawyqqkpgkapkaliyyasnlesgvps
rfsgsgagtdftltisslqpedfalyycqqhnnypltfgpgtkvdik

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6vo1L (L:)
divmtqspsslsasvgdtvtitcrasqditndlawyqqkpgkapkaliyyasnlesgvps
rfsgsgagtdftltisslqpedfalyycqqhnnypltfgpgtkvdik