PDB entry 6vnw

View 6vnw on RCSB PDB site
Description: cryo-em structure of apo-bbsome
Deposited on 2020-01-29, released 2020-07-01
The last revision was dated 2020-07-01, with a file datestamp of 2020-06-26.
Experiment type: EM
Resolution: 3.44 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'B':
    Compound: Bardet-Biedl syndrome 2 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Bardet-Biedl syndrome 7 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: BBS1 domain-containing protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Bardet-Biedl syndrome 4 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Tetratricopeptide repeat domain 8
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Bardet-Biedl syndrome 5 protein homolog
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Bardet-Biedl syndrome 18 protein
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Bardet-Biedl syndrome 9
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vnwB (B:)
    mlqpvftlklrhkisprmvavgrydgthpclaaatqagkvfihnphsrsqhlgaprvlqs
    plesdvsllninqtvscltagvlnpelgydallvgtqtnllaydvynnsdlfyrevadga
    saivlgtlgditsplaiiggncalqgfnhegndlfwtvtgdnvhslalcdfdgdgkkell
    vgsedfdirvfkedeivaemseteiitslcpmygsrfgyalsngtvgvydktarywriks
    knqamsihafdlnsdgvcelitgwsngkvdarsdrtgevifkdnfssaiagvvegdyrme
    gcqqliccsvdgeirgylpgtaemrgnlmdisveqdlirelsqkkqnlllelrnyeenak
    aelssplneadghrgvipantkhhtalsvslgseaqaahaelcistsndtiiravlifae
    gvfageshvvhpsvhhlsssvripitppkdipvdlhlktfvgyrsstqfhvfeltrqlpr
    fsmyaltspdpaseplsyvnfiiaeraqrvvmwlnqnfllpedtniqnapfqvcftslrn
    ggqlyikiklsgeitvntddidlagdiiqsmasffaiedlqveadfpvyfeelrkvlvkv
    deyhsvhqklsadmadnsnlirsllvqaedarlmrdmktmknrykelydlnkdllngyki
    rcnnhtellgslkavnqaiqraghlrvgkpknqvitacrdairsnninmlfrimrvgtas
    s
    

    Sequence, based on observed residues (ATOM records):
    >6vnwB (B:)
    lqpvftlklrhkisprmvavgrydgthpclaaatqagkvfihnpdvsllninqtvsclta
    gvlnpelgydallvgtqtnllaydvynnsdlfyrevadgasaivlgtlgditsplaiigg
    ncalqgfnhegndlfwtvtgdnvhslalcdfdgdgkkellvgsedfdirvfkedeivaem
    seteiitslcpmygsrfgyalsngtvgvydktarywriksknqamsihafdlnsdgvcel
    itgwsngkvdarsdrtgevifkdnfssaiagvvegdyrmegcqqliccsvdgeirgylpi
    relsqkkqnlllelrnyeenagvipantkhhtalsvslgahaelcistsndtiiravlif
    aegvfageshvvhpsvhhlsssvripitppkdipvdlhlktfvgyrsstqfhvfeltrql
    prfsmyaltspdpaseplsyvnfiiaeraqrvvmwlnqnfllpedtniqnapfqvcftsl
    rnggqlyikiklsgeitvntddidlagdiiqsmasffaiedlqveadfpvyfeelrkvlv
    kvdeyhsvhqklsadmadnsnlirsllvqaedarlmrdmktmknrykelydlnkdllngy
    kircnnhtellgslkavnqaiqraghlrvgkpknqvitacrdairsnninmlfrimrvg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vnwC (C:)
    mdlnlnradylqvgvtsqktmkllpaskhratqkvvvgdhdgivmcfgmkkgeavtvfkt
    lpgqkiarlelggalntpqekifiaagseirgftkrgkqflsfetnltesikamhisgsd
    lflsasyiynhycdckdqhyylsgdkindviclpverllrevpvlacqdrvlrvlqgsdv
    tyeievpgpptvlalhngnggdsgedllfgtsdgklgliqittskpihkweirnekkrgg
    ilcvdsfdivgdgvkdllvgrddgmvevygfdnanepvlrfdhtlsesvtsiqggcvgkd
    gydeivvstysgwitglttepvhkesgpgeelkfnqemqnkisslrseleqlqykvlqer
    ekyqqssqsskaksavpsfsvndkftlnkddasyslilevqtaidnvliqsdvpidlldv
    dknsavvsfsscdsesndnfllatyrcqanttrlelkirsiegqygtlqayvtpriqpkt
    cqvrqyhikplslhqrthfidhdrpmntltltgqfsfselhswvvfcmpevpekppagec
    vtfyfqntfldtqlestyrkgegvfksdnistisilkdvlskeatkrkinlnisyeinev
    svkhtlklihpkleyqlllakkvqlidalkelqvhegntnflipeyrcileeadhlqeey
    kkqpahlerlygmitdlfidkfkfkgtnvktkvpllleildsydqnaliaffdaa
    

    Sequence, based on observed residues (ATOM records):
    >6vnwC (C:)
    dlnlnradylqvgvtsqktmkllparatqkvvvgdhdgivmcfgmkkgeavtvfktlpgq
    kiarlelggalntpqekifiaagseirgftkrgkqflsfetnltesikamhisgsdlfls
    asyiynhycdckdqhyylsgdkindviclpverllrevpvlacqdrvlrvlqgsdvtyei
    evpgpptvlalhngnggdsgedllfgtsdgklgliqittskpihkweirnekkrggilcv
    dsfdivgdgvkdllvgrddgmvevygfdnanepvlrfdhtlsesvtsiqggcvgkdgyde
    ivvstysgwitglttepvhkesgpgnqemqnkisslrseleqlqykvlqerekyqqssps
    fsvndkftlnkddasyslilevqtaidnvliqsdknsavvsfslatyrcqanttrlelki
    rsiegqyglqayvtpriqpktcqvrqyhikphqrthfidhdrpmntltltgqfsfselhs
    wvvfcmpevpekppagecvtfyfqntfldtqlestyrkgegvfksdnistisilkdvlsk
    eatkreinevsvkhtlklihpkleyqlllakkvqlidalkelqvhegntnflipeyrcil
    eeadhlqeeykkqpahlerlygmitdlfidkfkfkgtnvktkvpllleildsydqnalia
    ffdaa
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vnwD (D:)
    maatsssdsdggkgeseanskwldslsdsmanihtfsaclaladfhgdgeyklamgdlgp
    dgrqprlkvlkghtlvsqkplpdlpaaavtflmasheprtpalaiasgpcvyvyknlkpy
    fkfslpslptnpleqdlwnqakedqidpltlkemlegirekaevplsvqslrflplelse
    meafvnqhksksirrqtvittmttlkknladedavsclvlgtenkellvldpeaftilak
    mslpsvpafleasgqfdvefrlaaacrngsiyilrrdskrpkycielgaqpvglvgvhkv
    lvvgsnqdslhgftykgkrlwtvqmpaailamnlleqhsrglqavmaalaneevriyhdk
    vllnvirtpeavtslcfgrygredntlimttlgggliikilkrtavfaegggeagpppsq
    aiklnvprktrlyvdqtlrereagtamhrtfqadlyllrlraarayvqalesslspvslt
    areplklhavvqglgptfkltlhlqntstarpilglvvcflynevlyalpraffkvpllv
    pglnypletfvkslsdkgisdiikvlvlregqstpllsahinmpmseglaad
    

    Sequence, based on observed residues (ATOM records):
    >6vnwD (D:)
    aclaladfhgdgeyklamgdlgpdgrqprlkvlkghtlvsqkplpdlpaaavtflmashe
    prtpalaiasgpcvyvyknlkpyfkfslpslptnpleqdlwnqakedqidpltlkemleg
    irekaevplsvqslrflplelsemeafvnqhksksirrqtvittmttlkknladedavsc
    lvlgtenkellvldpeaftilakmslpsvpafleasgqfdvefrlaaacrngsiyilrrd
    skrpkycielgaqpvglvgvhkvlvvgsnqdslhgftykgkrlwtvqmpaailamnlleq
    hsrglqavmaalaneevriyhdkvllnvirtpeavtslcfgrygredntlimttlgggli
    ikilklnvprktrlyvdqtlrereagtamhrtfqadlyllrlraarayvqalesslspvs
    replklhavvqglgptfkltlhlqntstarpilglvvcflynevlyalpraffkvpllvp
    glnypletfvkslsdkgisdiikvlvlregqstpllsahinmpmsegl
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vnwE (E:)
    maeeklsartqlpvsaesqkpvlkkapefpilekqnwlihlyyiqkdyeackavikeqlq
    ethglceyaiyvqalifrlegniqeslrlfqmcaflspqcadnlkqvarslfllgkhkaa
    ievyneaaklnqkdweichnlgvcyiylkqfdkaqdqlhnalhlnrhdltyimlgkifll
    kgdldkaieiykkavefspentellttlgllylqlgiyqkafehlgntltydptnykail
    aagsmmqthgdfdvaltkykvvacaviespplwnnigmcffgkkkyvaaisclkranyla
    pldwkilynlglvhltmqqyasafhflsaainfqpkmgelymllavaltnledsenakra
    yeeavrldkcnplvnlnyavllynqgekrdalaqyqemekkvnllkyssslefdpemvev
    aqklgaalqvgealvwtkpvkdpkskhqtastskaagfqqplgsnqalgqamssaatcrk
    lssgaggtsqltkppslplepeptveaqpteasaqtrek
    

    Sequence, based on observed residues (ATOM records):
    >6vnwE (E:)
    lekqnwlihlyyiqkdyeackavikeqlqethglceyaiyvqalifrlegniqeslrlfq
    mcaflspqcadnlkqvarslfllgkhkaaievyneaaklnqkdweichnlgvcyiylkqf
    dkaqdqlhnalhlnrhdltyimlgkifllkgdldkaieiykkavefspentellttlgll
    ylqlgiyqkafehlgntltydptnykailaagsmmqthgdfdvaltkykvvacaviespp
    lwnnigmcffgkkkyvaaisclkranylapldwkilynlglvhltmqqyasafhflsaai
    nfqpkmgelymllavaltnledsenakrayeeavrldkcnplvnlnyavllynqgekrda
    laqyqemekkvssslefdpemvevaqkl
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vnwF (F:)
    meplllawsyfrrrrfqlcadlctqmlekspcdqaawilkaraltemvyvdeidvdeegi
    aemildenaiaqvprpgtslklpgtnqtggpspavrpvtqagrpitgflrpstqsgrpgt
    ieqaiktprtaytarpiasssgrfvrlgtasmltspdgpfinlsrlnlakyaqkpklaka
    lfeyifhhendvktaldlaalstehsqykdwwwkvqigkcyyrlglyreaekqfksalkq
    qemvdtflylakvyisldqpltalnlfkqgldkfpgevtllcgiariyeemnnissatey
    ykevlkqdnthveaiacigsnhfytdqpevalrfyrrllqmgvyncqlfnnlglccfyaq
    qydmtltsferalslaeneeevadvwynlghvavgtgdtnlahqcfrlalvsnnqhaeay
    nnlavlemrrghveqakallqtasslaphmyephfnfatisdkigdlqrsyaaakkseaa
    fpdhvdtqhlikqleqhfaml
    

    Sequence, based on observed residues (ATOM records):
    >6vnwF (F:)
    meplllawsyfrrrrfqlcadlctqmlekspcdqaawilkaraltemvyvdeidvdeegi
    aemildenaiaqvprpgtslkgpspavrpvtqagrpitgflrpstqsgrpgtieqaiktp
    rtaytarpiasssgpfinlsrlnlakyaqkpklakalfeyifhhendvktaldlaalste
    hsqykdwwwkvqigkcyyrlglyreaekqfksalkqqemvdtflylakvyisldqpltal
    nlfkqgldkfpgevtllcgiariyeemnnissateyykevlkqdnthveaiacigsnhfy
    tdqpevalrfyrrllqmgvyncqlfnnlglccfyaqqydmtltsferalslaeneeevad
    vwynlghvavgtgdtnlahqcfrlalvsnnqhaeaynnlavlemrrghveqakallqtas
    slaphmyephfnfatisdkigdlqrsyaaakkseaafpdhvdtqhlikqleqhfa
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vnwG (G:)
    msvldalwedrdvrfdvssqqmktrpgevlidcldsvedtkgnngdrgrllvtnlrivwh
    slalprvnlsigyncilnittrtansklrgqtealyvltkcnstrfefiftnlvpgsprl
    ytsliavhrayetskmyrdfklrsaliqnkqlrllpqenvynkingvwnlssdqgnlgtf
    fitnvrivwhanmndsfnvsipylqirsvkirdskfglalviessqqsggyvlgfkidpv
    eklqesvkeinslhkvysanpifgvdyemeekpqplealtvkqiqddveidsddhtdafv
    ayfadgnkqqdrepvfseelglaieklkdgftlqglwevmn
    

    Sequence, based on observed residues (ATOM records):
    >6vnwG (G:)
    alwedrdvrfdvssqqmktrpgevlidcldsvedtkgnngdrgrllvtnlrivwhslalp
    rvnlsigyncilnittrtansklrgqtealyvltkcnstrfefiftnlvpgsprlytsli
    avhrayetskmyrdfklrsaliqnkqlrllpqenvynkingvwnlssdqgnlgtffitnv
    rivwhanmndsfnvsipylqirsvkiralviessqqsggyvlgfkidpveklqesvkein
    slhkvysanpifgvdytdafvayfadgnkqqdrepvfseelglaieklkdgftlqglwev
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6vnwH (H:)
    maetksmfrevlpkqgqlyvedittmvlckpkllplksltleklekmqqaaqdtihqqem
    tekeqkith
    

    Sequence, based on observed residues (ATOM records):
    >6vnwH (H:)
    mfrevlpkqgqlyvedittmvlckpkllplksltleklekmqqaaqdtihqq
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6vnwI (I:)
    mslfkardwwstvlgdkeefdqgclcladvdntgngqdkiivgsfmgylrifnphpvktg
    dgaqaedlllevhlrdpilqvevgkfvsgtemlhlavlhsrklcvysvsgtlgnvehgnq
    yqiklmyehnlqrtacnmtygsfggvkgrdliciqsvdgmlmvfeqesyafgrflpgsll
    pgplayssrtdsfitvsschqvesykyqvlafatdadkrqeteqqkhgsgkrlvvdwtln
    igeqaidicivsfiqsassvfvlgernffclkdngqiqfmkkldyspscflpycsvsegt
    intlignhnnmlhiyqdvtlkwatqlphvpvavrvgclhdlkgvivtlsddghlqcsylg
    tdpslfqapkvesrelnydeldmelkelqkviknvnksqdvwpltereddlkvsamvspn
    fdsvsqatdvevgadlvpsvtvkvtlknrvalqkiklsiyvqpplvltgdqftfefmape
    mtrtvgfsvylkgsysppelegnavvsysrpternpdgiprvsqckfrlplklvclpgqp
    sktashkltidtnkspvsllslfpgfakqseddqvnvmgfrflggsqvtllasktsqryr
    iqseqfedlwlitneliirlqeyfekqgikdftcsfsgsvpleeyfelidhhfelringe
    kleellseravqfraiqrrlltrfkdktpaplqhldtlldgtykqvialadaveenqdnl
    fqsftrlksathlvilliglwqklsadqiaileaaflplqqdtqelgweetvdaalshll
    ktclsksskeqalnlnsqlgipkdtsqlkkhitlfcdrlakggrlclstdaaapqtmvmp
    ggcatipesdlegrsidqdsselftnhkhlmvetpvpevsplqgvte
    

    Sequence, based on observed residues (ATOM records):
    >6vnwI (I:)
    slfkardwwstvlgdkeefdqgclcladvdntgngqdkiivgsfmgylrifnphpaqaed
    lllevhlrdpilqvevgkfvsgtemlhlavlhsrklcvysvsgtlgnvehgnqyqiklmy
    ehnlqrtacnmtygsfggvkgrdliciqsvdgmlmvfeqesyafgrflpgsllpgplays
    srtdsfitvsschqvesykyqvlafavvdwtlnigeqaidicivsfiqsassvfvlgern
    ffclkdngqiqfmkkldyspscflpycsvsegtintlignhnnmlhiyqdvtlkwatqlp
    hvpvavrvgclhdlkgvivtlsddghlqcsylgtdpslfqapkvesrelnydeldmelke
    lqkviknvnkdlkvsamvspnsvtvkvtlknrvalqkiklsiyvqpplvltgdqftfefm
    apemtrtvgfsvylkgsysppelegnavvsysrpternpdgiprvsqckfrlplklvclp
    gqpsktashkltidtnkspvsllslfpgfavnvmgfrflggsqvtllasktsqryriqse
    qfedlwlitneliirlqeyfekqgikdftcsfsgsvpleeyfelidhhfelringeklee
    llseravqfraiqrrlltrfkdktpaplqhldtlldgtykqvialadaveenqdnlfqsf
    trlksathlvilliglwqklsadqiaileaaflplqqdtqelgweetvdaalshllktcl
    sksskeqalnlnsqlgipkdtsqlkkhitlfcdrlakggrlcls