PDB entry 6vn0

View 6vn0 on RCSB PDB site
Description: bg505 sosip.v4.1 in complex with rhesus macaque fab rm20f
Deposited on 2020-01-29, released 2020-06-24
The last revision was dated 2020-09-16, with a file datestamp of 2020-09-11.
Experiment type: EM
Resolution: 4.25 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (283)
      • conflict (300)
      • conflict (468)
  • Chain 'B':
    Compound: envelope glycoprotein gp41
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (93)
  • Chain 'C':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (283)
      • conflict (300)
      • conflict (468)
  • Chain 'D':
    Compound: envelope glycoprotein gp160
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (283)
      • conflict (300)
      • conflict (468)
  • Chain 'E':
    Compound: envelope glycoprotein gp41
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (93)
  • Chain 'F':
    Compound: envelope glycoprotein gp41
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Gene: ENV
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q2N0S6
      • conflict (93)
  • Chain 'G':
    Compound: RM20F Fab Heavy Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VN0 (Start-125)
  • Chain 'H':
    Compound: RM20F Fab Heavy Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VN0 (Start-125)
  • Chain 'I':
    Compound: RM20F Fab Heavy Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VN0 (Start-125)
  • Chain 'J':
    Compound: RM20F Kappa Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VN0 (0-106)
  • Chain 'K':
    Compound: RM20F Kappa Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VN0 (0-106)
  • Chain 'L':
    Compound: RM20F Kappa Chain
    Species: MACACA MULATTA [TaxId:9544]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VN0 (0-106)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vn0A (A:)
aenlwvtvyygvpvwkdaettlfcasdakayetkkhnvwathacvptdpnpqeihlenvt
eefnmwknnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncs
fnmttelrdkkqkvyslfyrldvvqinenqgnrsnnsnkeyrlincntsaitqacpkvsf
epipihycapagfailkckdkkfngtgpcpsvstvqcthgikpvvstqlllngslaeeev
mirsenitnnaknilvqfntpvqinctrpnnntrksirigpgqwfyatgdiigdirqahc
nvskatwnetlgkvvkqlrkhfgnntiirfanssggdlevtthsfncggeffycntsglf
nstwisntsvqgsnstgsndsitlpcrikqiinmwqrigqamyappiqgvircvsnitgl
iltrdggstnsttetfrpgggdmrdnwrselykykvvkieplgvaptrckrrvvg

    Sequence, based on observed residues (ATOM records):
    >6vn0A (A:)
nlwvtvyygvpvwkdaettlfcasdakkhnvwathacvptdpnpqeihlenvteefnmwk
nnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttel
rdkkqkvyslfyrldvvqiyrlincntsaitqacpkvsfepipihycapagfailkckdk
kfngtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntp
vqinctrpnnntrksirigpgqwfyatgdiigdirqahcnvskatwnetlgkvvkqlrkh
fgnntiirfanssggdlevtthsfncggeffycntsglfnstwitlpcrikqiinmwqri
gqamyappiqgvircvsnitgliltrdgtetfrpgggdmrdnwrselykykvvkieplgv
aptrckr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vn0B (B:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapeaqqhllkltvw
gikqlqarvlaverylrdqqllgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqw
dkeisnytqiiyglleesqnqqekneqdllald

    Sequence, based on observed residues (ATOM records):
    >6vn0B (B:)
vflgflgaagstmgaasmtltvqarnllsgivqqqltvwgikqlqarvlaverylrdqql
lgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnq
qekneqdll

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vn0C (C:)
aenlwvtvyygvpvwkdaettlfcasdakayetkkhnvwathacvptdpnpqeihlenvt
eefnmwknnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncs
fnmttelrdkkqkvyslfyrldvvqinenqgnrsnnsnkeyrlincntsaitqacpkvsf
epipihycapagfailkckdkkfngtgpcpsvstvqcthgikpvvstqlllngslaeeev
mirsenitnnaknilvqfntpvqinctrpnnntrksirigpgqwfyatgdiigdirqahc
nvskatwnetlgkvvkqlrkhfgnntiirfanssggdlevtthsfncggeffycntsglf
nstwisntsvqgsnstgsndsitlpcrikqiinmwqrigqamyappiqgvircvsnitgl
iltrdggstnsttetfrpgggdmrdnwrselykykvvkieplgvaptrckrrvvg

    Sequence, based on observed residues (ATOM records):
    >6vn0C (C:)
nlwvtvyygvpvwkdaettlfcasdakkhnvwathacvptdpnpqeihlenvteefnmwk
nnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttel
rdkkqkvyslfyrldvvqiyrlincntsaitqacpkvsfepipihycapagfailkckdk
kfngtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntp
vqinctrpnnntrksirigpgqwfyatgdiigdirqahcnvskatwnetlgkvvkqlrkh
fgnntiirfanssggdlevtthsfncggeffycntsglfnstwitlpcrikqiinmwqri
gqamyappiqgvircvsnitgliltrdgtetfrpgggdmrdnwrselykykvvkieplgv
aptrckr

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vn0D (D:)
aenlwvtvyygvpvwkdaettlfcasdakayetkkhnvwathacvptdpnpqeihlenvt
eefnmwknnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncs
fnmttelrdkkqkvyslfyrldvvqinenqgnrsnnsnkeyrlincntsaitqacpkvsf
epipihycapagfailkckdkkfngtgpcpsvstvqcthgikpvvstqlllngslaeeev
mirsenitnnaknilvqfntpvqinctrpnnntrksirigpgqwfyatgdiigdirqahc
nvskatwnetlgkvvkqlrkhfgnntiirfanssggdlevtthsfncggeffycntsglf
nstwisntsvqgsnstgsndsitlpcrikqiinmwqrigqamyappiqgvircvsnitgl
iltrdggstnsttetfrpgggdmrdnwrselykykvvkieplgvaptrckrrvvg

    Sequence, based on observed residues (ATOM records):
    >6vn0D (D:)
nlwvtvyygvpvwkdaettlfcasdakkhnvwathacvptdpnpqeihlenvteefnmwk
nnmveqmhtdiislwdqslkpcvkltplcvtlqctnvtnnitddmrgelkncsfnmttel
rdkkqkvyslfyrldvvqiyrlincntsaitqacpkvsfepipihycapagfailkckdk
kfngtgpcpsvstvqcthgikpvvstqlllngslaeeevmirsenitnnaknilvqfntp
vqinctrpnnntrksirigpgqwfyatgdiigdirqahcnvskatwnetlgkvvkqlrkh
fgnntiirfanssggdlevtthsfncggeffycntsglfnstwitlpcrikqiinmwqri
gqamyappiqgvircvsnitgliltrdgtetfrpgggdmrdnwrselykykvvkieplgv
aptrckr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6vn0E (E:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapeaqqhllkltvw
gikqlqarvlaverylrdqqllgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqw
dkeisnytqiiyglleesqnqqekneqdllald

    Sequence, based on observed residues (ATOM records):
    >6vn0E (E:)
vflgflgaagstmgaasmtltvqarnllsgivqqqltvwgikqlqarvlaverylrdqql
lgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnq
qekneqdll

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6vn0F (F:)
avgigavflgflgaagstmgaasmtltvqarnllsgivqqqsnllrapeaqqhllkltvw
gikqlqarvlaverylrdqqllgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqw
dkeisnytqiiyglleesqnqqekneqdllald

    Sequence, based on observed residues (ATOM records):
    >6vn0F (F:)
vflgflgaagstmgaasmtltvqarnllsgivqqqltvwgikqlqarvlaverylrdqql
lgiwgcsgklicctnvpwnsswsnrnlseiwdnmtwlqwdkeisnytqiiyglleesqnq
qekneqdll

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6vn0G (G:)
qvqlvqsggalvqpgaslrlscaasefsfsthdmhwvrqapgkglewvsginihggtyyp
dsvkgrftisrdsaknslylqmsslrdgdtavyfcarggkpiyysggypswyfdlwgpgt
pitiss

    Sequence, based on observed residues (ATOM records):
    >6vn0G (G:)
vqlvqsggalvqpgaslrlscaasefsfsthdmhwvrqapgkglewvsginihggtyypd
svkgrftisrdsaknslylqmsslrdgdtavyfcarggkpiyysggypswyfdlwgpgtp
itiss

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6vn0H (H:)
qvqlvqsggalvqpgaslrlscaasefsfsthdmhwvrqapgkglewvsginihggtyyp
dsvkgrftisrdsaknslylqmsslrdgdtavyfcarggkpiyysggypswyfdlwgpgt
pitiss

    Sequence, based on observed residues (ATOM records):
    >6vn0H (H:)
vqlvqsggalvqpgaslrlscaasefsfsthdmhwvrqapgkglewvsginihggtyypd
svkgrftisrdsaknslylqmsslrdgdtavyfcarggkpiyysggypswyfdlwgpgtp
itiss

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6vn0I (I:)
qvqlvqsggalvqpgaslrlscaasefsfsthdmhwvrqapgkglewvsginihggtyyp
dsvkgrftisrdsaknslylqmsslrdgdtavyfcarggkpiyysggypswyfdlwgpgt
pitiss

    Sequence, based on observed residues (ATOM records):
    >6vn0I (I:)
vqlvqsggalvqpgaslrlscaasefsfsthdmhwvrqapgkglewvsginihggtyypd
svkgrftisrdsaknslylqmsslrdgdtavyfcarggkpiyysggypswyfdlwgpgtp
itiss

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6vn0J (J:)
dvvmtqspgfrsvtlkekvsitcqasqtigtnlhwyqqkpgqspkllikyssqsisgvps
rfsgsgsgtdftltinsleaddaatyycqqtnsfpctfgpgtkveik

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6vn0K (K:)
dvvmtqspgfrsvtlkekvsitcqasqtigtnlhwyqqkpgqspkllikyssqsisgvps
rfsgsgsgtdftltinsleaddaatyycqqtnsfpctfgpgtkveik

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6vn0L (L:)
dvvmtqspgfrsvtlkekvsitcqasqtigtnlhwyqqkpgqspkllikyssqsisgvps
rfsgsgsgtdftltinsleaddaatyycqqtnsfpctfgpgtkveik