PDB entry 6vls

View 6vls on RCSB PDB site
Description: structure of c-terminal fragment of vip3a toxin
Deposited on 2020-01-25, released 2020-07-22
The last revision was dated 2020-07-22, with a file datestamp of 2020-07-17.
Experiment type: XRAY
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Maltose/maltodextrin-binding periplasmic protein,Vip3Aa
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: malE, b4034, JW3994
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEX9 (1-366)
      • linker (367-375)
    • Uniprot W8GI72 (376-965)
  • Chain 'B':
    Compound: Maltose/maltodextrin-binding periplasmic protein,Vip3Aa
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: malE, b4034, JW3994
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEX9 (1-366)
      • linker (367-375)
    • Uniprot W8GI72 (376-965)
  • Chain 'C':
    Compound: Maltose/maltodextrin-binding periplasmic protein,Vip3Aa
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: malE, b4034, JW3994
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEX9 (1-366)
      • linker (367-375)
    • Uniprot W8GI72 (376-965)
  • Chain 'D':
    Compound: Maltose/maltodextrin-binding periplasmic protein,Vip3Aa
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: malE, b4034, JW3994
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0AEX9 (1-366)
      • linker (367-375)
    • Uniprot W8GI72 (376-965)
  • Heterogens: PEG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6vlsA (A:)
mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdi
ifwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynk
dllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydik
dvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsk
vnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkpl
gavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvde
alkdaqtaarafaaasgspadildelteltelaksvtkndvdgfefylntfhdvmvgnnl
fgrsalktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidy
tsimnehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeis
ndsitvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvit
kidftkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvise
tfltpingfglqadensrlitltcksylrelllatdlsnketklivppsgfisnivengs
ieednlepwkannknayvdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkg
kpsihlkdentgyihyedtnnnledyqtinkrfttgtdlkgvylilksqngdeawgdnfi
ileispsekllspelintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyf
svsgdanvrirnsrevlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhf
ydvsik

    Sequence, based on observed residues (ATOM records):
    >6vlsA (A:)
kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdii
fwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkd
llpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikd
vgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskv
nygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplg
avalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdea
lkdaqtaarafaaasgspadildelteltelaksvtkndgfefylntfhdvmvgnnlfgr
salktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidytsi
mnehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeisnds
itvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvitkid
ftkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvisetfl
tpingfglqadensrlitltcksylrelllatdltklivppsgfisnivengsieednle
pwkannknayvdhtggvngtkalyvgisqfigdklkpkteyviqytvkgkpsihlkdent
gyihyedtnnnlyqtinkrfttgtdlkgvylilksqngdeawgdnfiileispsekllsp
elintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyfsvsgdanvrirns
revlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhfydvsik

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6vlsB (B:)
mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdi
ifwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynk
dllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydik
dvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsk
vnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkpl
gavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvde
alkdaqtaarafaaasgspadildelteltelaksvtkndvdgfefylntfhdvmvgnnl
fgrsalktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidy
tsimnehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeis
ndsitvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvit
kidftkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvise
tfltpingfglqadensrlitltcksylrelllatdlsnketklivppsgfisnivengs
ieednlepwkannknayvdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkg
kpsihlkdentgyihyedtnnnledyqtinkrfttgtdlkgvylilksqngdeawgdnfi
ileispsekllspelintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyf
svsgdanvrirnsrevlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhf
ydvsik

    Sequence, based on observed residues (ATOM records):
    >6vlsB (B:)
kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdii
fwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkd
llpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikd
vgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskv
nygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplg
avalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdea
lkdaqtaarafaaasgspadildelteltelaksvtdgfefylntfhdvmvgnnlfgrsa
lktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidytsimn
ehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeisndsit
vlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvitkidft
kkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvisetfltp
ingfglqadensrlitltcksylrelllatlivppsgfisnivengsieednlepwkann
knayvdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkgkpsihlkdentgy
ihyedtnnnyqtinkrfttgtdlkgvylilksqngdeawgdnfiileispsekllspeli
ntnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyfsvsgdanvrirnsrev
lfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhfydvsik

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6vlsC (C:)
mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdi
ifwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynk
dllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydik
dvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsk
vnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkpl
gavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvde
alkdaqtaarafaaasgspadildelteltelaksvtkndvdgfefylntfhdvmvgnnl
fgrsalktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidy
tsimnehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeis
ndsitvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvit
kidftkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvise
tfltpingfglqadensrlitltcksylrelllatdlsnketklivppsgfisnivengs
ieednlepwkannknayvdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkg
kpsihlkdentgyihyedtnnnledyqtinkrfttgtdlkgvylilksqngdeawgdnfi
ileispsekllspelintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyf
svsgdanvrirnsrevlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhf
ydvsik

    Sequence, based on observed residues (ATOM records):
    >6vlsC (C:)
kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdii
fwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkd
llpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikd
vgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskv
nygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplg
avalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdea
lkdaqtaarafaaasgspadildelteltelaksvtvdgfefylntfhdvmvgnnlfgrs
alktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidytsim
nehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeisndsi
tvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvitkidf
tkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvisetflt
pingfglqadensrlitltcksylrelllatdlsnketklivppsgfisnivengsieed
nlepwkannkdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkgkpsihlkd
entgyihyedtnnyqtinkrfttgtdlkgvylilksqngdeawgdnfiileispseklls
pelintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyfsvsgdanvrirn
srevlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhfydvsik

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6vlsD (D:)
mkieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdi
ifwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynk
dllpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydik
dvgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtsk
vnygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkpl
gavalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvde
alkdaqtaarafaaasgspadildelteltelaksvtkndvdgfefylntfhdvmvgnnl
fgrsalktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidy
tsimnehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeis
ndsitvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvit
kidftkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgvise
tfltpingfglqadensrlitltcksylrelllatdlsnketklivppsgfisnivengs
ieednlepwkannknayvdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkg
kpsihlkdentgyihyedtnnnledyqtinkrfttgtdlkgvylilksqngdeawgdnfi
ileispsekllspelintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyf
svsgdanvrirnsrevlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhf
ydvsik

    Sequence, based on observed residues (ATOM records):
    >6vlsD (D:)
kieegklviwingdkgynglaevgkkfekdtgikvtvehpdkleekfpqvaatgdgpdii
fwahdrfggyaqsgllaeitpdkafqdklypftwdavryngkliaypiavealsliynkd
llpnppktweeipaldkelkakgksalmfnlqepyftwpliaadggyafkyengkydikd
vgvdnagakagltflvdliknkhmnadtdysiaeaafnkgetamtingpwawsnidtskv
nygvtvlptfkgqpskpfvgvlsaginaaspnkelakeflenylltdegleavnkdkplg
avalksyeeelakdpriaatmenaqkgeimpnipqmsafwyavrtavinaasgrqtvdea
lkdaqtaarafaaasgspadildelteltelaksvtkndvdgfefylntfhdvmvgnnlf
grsalktaselitkenvktsgsevgnvynflivltalqakafltlttcrkllgladidyt
simnehlnkekeefrvnilptlsntfsnpnyakvkgsdedakmiveakpghaligfeisn
dsitvlkvyeaklkqnyqvdkdslseviygdmdkllcpdqseqiyytnnivfpneyvitk
idftkkmktlryevtanfydsstgeidlnkkkvesseaeyrtlsanddgvymplgviset
fltpingfglqadensrlitltcksylrelllatdlketklivppsgfisnivengsiee
dnlepwkannknayvdhtggvngtkalyvhkdggisqfigdklkpkteyviqytvkgkps
ihlkdentgyihyedtnnnledyqtinkrfttgtdlkgvylilksqngdeawgdnfiile
ispsekllspelintnnwtstgstnisgntltlyqggrgilkqnlqldsfstyrvyfsvs
gdanvrirnsrevlfekrymsgakdvsemfttkfekdnfyielsqgnnlyggpivhfydv
sik