PDB entry 6vln

View 6vln on RCSB PDB site
Description: crystal structure of 4498 fab in complex with circumsporozoite protein dnd3 and anti-kappa vhh domain
Deposited on 2020-01-24, released 2020-06-17
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-24.
Experiment type: XRAY
Resolution: 1.63 Å
R-factor: N/A
AEROSPACI score: 0.51 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: 4498 Fab heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VLN (0-229)
  • Chain 'K':
    Compound: anti Kappa VHH domain
    Species: Camelidae mixed library, synthetic [TaxId:1579311]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VLN (0-120)
  • Chain 'L':
    Compound: 4498 Fab light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6VLN (0-212)
  • Chain 'P':
    Compound: Circumsporozoite protein
    Species: PLASMODIUM FALCIPARUM, synthetic [TaxId:5833]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6vlnH (H:)
qvqlvesgggvvqpgrslrlscaasgftfsiygmhwvrqapgkglewvaliwydgtnkyy
tdsvkgrftisrdnskntlflqmnsvraedtavyycardahysdssgysswgyfdywgqg
slvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtf
pavlqssglyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepksc

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6vlnK (K:)
xvqlxxsgggxvqxgxslxlscxaxxxxxxxxxxxwxrqxpgxxrexvxxxxxxxxxxxx
xdsxxgrftxsxdxxxxxxxlqxxxlxxxdxaxyycxxxxxxxxxxxxxxwgxgtxvtvs
s

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6vlnL (L:)
eivltqspatlslspgeratlscrasqsvssylawyqqkpgqaprllifdasiratgipa
rfsgsgsgtdftltisslepedfavyycqqrsnwytfgqgtkleikrtvaapsvfifpps
deqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsstltl
skadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6vlnP (P:)
nvdpnanpnvdp

    Sequence, based on observed residues (ATOM records):
    >6vlnP (P:)
vdpnanpnvd